Search Results for "level set method" - Page 21
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Showing 703 open source projects for "level set method"
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GASiC
Genome Abundance Similarity Correction
One goal of sequencing based metagenomic analysis is the quantitative taxonomic assessment of microbial community compositions. However, the majority of approaches either quantify at low resolution (e.g. at phylum level) or have severe problems discerning highly similar species. Yet, accurate quantification on species level is desirable in applications such as metagenomic diagnostics or community comparison. GASiC is a method to correct read alignment results for the ambiguities imposed by similarities of genomes. It has superior performance over existing methods. ... -
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Linear Equations Set Solver
Solving Set Of Linear Equations with use of Gauss elimination method.
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cvastroalign
video align tool for astrophotography
cvastroalign is a program that loads a video sequence, aligns and stacks the selected frames obtaining an image as result of this process.. -
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ApprovalRatingBar
Swing component for displaying an Approval Rating Bar
...The Approval Rating Bar component displays a rating bar, made of a custom number of markers, that can be selected/unselected by the user. The ApprovalRatingBar component handles the value choosen by the user or programmaticaly set via the standard setValue() method. It offers some other tricks, like component customization (type of marks, colors, images, orientation and starting-point) and registering of listeners (ActionListeners, ValueChangeListeners and SelectionChangeListeners). Min Java version required: Java 6 -
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BPT2
A set of library for C++ and a programming language
This project is a library based around a script programming language. This programming language allow high level manipulation of graphics (bitmap, sprites, sprite theatre, scrolling, API), sound (effects, music and sample) and of I/O (file, pipe, network) -
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CyberDragon Browser
CyberDragon Browser - privacy enhanced, portable browser
...Also proxy checker that list working proxies, their latency, country, SSL support and anonymity level is included. - Supports SOCKS5 proxies. Can be used with Tor -
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Facial Expression Recognition
Facial Expression Recognition System - Matlab source code
...The proposed method is fast and can be used for real-time applications. -
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Code Catcher
FREE Educational Computing Game
This is an educational game to help people practice Computing based subjects. This game will test players on their binary conversion skills. This program is run from the high-level programming language Python, along with a set of cross-platform modules designed for writing video games called Pygame. Users who want to play this game will require the following programs to be downloaded & installed onto their host computer... - Python - Pygame - Winrar (Recommended Archive Manager) -
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Cop-e-boox stylesheets
Cop-e-boox is a bundle of customised stylesheets to produce ebooks
Cop-e-boox is a bundle of customised stylesheets to produce ebook formats from structured XML files. It is an open-source package for structured single-source publishing, which lets you set up document styles to produce PDF, EPUB 3.0 and HTML5 (web page) ebook formats. You can think of cop-e-boox as a typesetting package for XML content that allows you to easily set up page layout and document structure, and change text and graphics styles. Cop-e-boox is designed as an entry-level starter kit for single-source desktop publishing and aims to provide a learning tool as an introduction to the technologies used for digital publishing with XML. -
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Text Expander, Inverse summarizer
Expand text, inverse summarizer
IT WILL WORK WITH A JAVA DEVELOPMENT KIT 1.7 ONLY !!! This program is a data-miner and a knowledge-miner. It does exactly the opposite of what the text summarizers do. A text summarizer produces a shortened text given some text as an input. An inverse summarizer takes the shortened input, a similar or a same text and does the process in reverse. This results in an expanded text. It can be used with any text or notes that have the knowledge gaps. It is a great aid to any creative... -
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Wslay WebSocket Library
WebSocket library written in C.
Wslay is a WebSocket library written in C. It implements the protocol version 13 described in RFC 6455. This library offers 2 levels of API: event-based API and frame-based low-level API. For event-based API, it is suitable for non-blocking reactor pattern style. You can set callbacks in various events. For frame-based API, you can send WebSocket frame directly. Wslay only supports data transfer part of WebSocket protocol and does not perform opening handshake in HTTP. Wslay does not perform any I/O operations for its own. ... -
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CupidTool
Cupid: simultaneous reconstruction of miRNA-target and ceRNA networks
Chiu et. al., Genome Research 2014 Cupid is a method for simultaneous prediction of miRNA-target interactions and their mediated competitive endogenous RNA (ceRNA) interactions. We showed that our integrative approach significantly improves on miRNA-target prediction accuracy as assessed by both mRNA and protein level measurements in breast cancer cell lines. Cupid is implemented in 3 steps: Step 1: re-evaluate candidate miRNA binding sites in 3’ UTRs, as inferred by TargetScan, miRanda and PITA by integrating their scores, location in the 3’ UTR, and cross-species conservation. ... -
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Canopy Reconstruction
Software for the reconstruction of plants using multiple camera views
This software reconstructs 3D plant models in multiple views. Point cloud input is segmented, then patches of leaf surface are grown using the level set method. Please see the CPIB website for news of updates and further development. -
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discremental
forever incremental hard disk based backups
This set of scripts is yet another rsync based backup solution. It uses the --link-dest option to create hard links to files that have not changed. Using this technique, each run results in a *full backup* even though the backup process used is incremental (only the files that changed since the last backup). This paradigm is sometimes called forever incremental backups. -
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Scripted Testing
Base support for Tcl-based testing in Ada
To set the scene, the Ada software under test (SUT) forms part of a system. Generally, the system will be constructed using a layered approach, and the other parts of the system that interact with the SUT are higher-level (which can call interface subprograms presented by the SUT) or lower-level (whose interfaces can be called by the SUT, or which can provide callbacks to the SUT). -
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TIDES
Taylor series Integrator for Differential Equations
Taylor series Integrator for Differential EquationS. This software is developed by Profs. A. Abad, R. Barrio, F. Blesa and M. Rodriguez, (GME, University of Zaragoza, Spain). It consists on a C (Fortran) library, libTIDES, and a Mathematica package, MathTIDES. (MathTIDES requires Mathematica version >= 7.0) . Basic references: * A. Abad, R. Barrio, F. Blesa, M. Rodriguez, 2012. Algorithm 924: TIDES, a Taylor series Integrator for Differential EquationS, ACM TOMS. 39, no. 1, art. 5.... -
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Absolute Xml Framework for Java
A simple but very sophisticated XML solution for the Java developer
The intention of this XML Framework is to allow the Java developer to do many difficult things with XML using a convenient set on methods in the API of this framework. Simplifying common Java XML coding using a rather sophisticated framework. This project is delivered as a JAR file You can find elements with XPATH statements A method provided that accepts a HashMap and adds this content to your xml. Two sample classes provided that give examples how to create different formats of XML even one with name value pairs A sample Netbeans Project is provided to provide sample code. ... -
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AFSM_seq
a simple and rapid method for genome-wide SNP and methylation site
Reference based analysis 1.Filter the raw reads obtained from Illumina Raw Data (paired-ends)according to your desired stringency, to produce a set of high-quality (HQ) sequences in fastq format. 2.Lignment reads (HQ, Fastq format) against Barcode file (Fasta format) using scanAP program. 3.Trim barcodes and filter paired-ends using trim_seq.pl. Classified paired-ends using fltfastq2pe.pl. to produce output “R1.trim.pair.fastq” and “R2.trim.pair.fastq”. 4.The filtered sequence reads... -
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Octree Method For Particles
simulation of particles using an oct-tree
Similiar to the fast multipole method i guess. I realized that simulating a very large number of particles in e.g. electromagnetic sims can run into growing i/o demands. This is a way to overcome that hurdle. the low-level "octets" can be distributed among a cluster of computers, organized in a grid. they don't have to send each other their whole dataset - only a zoomed out image of it. -
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Mail Relaxer
Synology package to hibernate while running Mail Station & Server
Start/Stop the mail processes as needed, allowing your Syno to hibernate (sleep) in the quiet hours. Only to be used with Mail Station polling external mail server(s), i.e. NOT when you run Mail Server with own domain (because the server should keep running all the time then). Still, you can use Mail Server just as IMAP server and SMTP relay. Mail Relaxer is not intended to be used with Zarafa. Credits for the original idea go to Tobi "jahlives" from German Synology forum. -
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MakeBreaks
a game for mfc like To eliminate the stars
1. The game can be set to the width, height, color variety and sound effects 2. The game can be saved at any time, with the fast preservation and save to file, exit will automatically save the game 3. The game is a classic model, classic mode is imitation phone model, classic mode is the highest and level Settings 4. The classic mode do not change the width of the game, height and color types 5. -
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FitText.js
A jQuery plugin for inflating web type
FitText makes font-sizes flexible. Use this plugin on your fluid or responsive layout to achieve scalable headlines that fill the width of a parent element. Oh, and don't you dare let us catch you using FitText on paragraph text. This is for gigantic display text only! Your text should now fluidly resize, by default: Font-size = 1/10th of the element's width. If your text is resizing poorly, you'll want to turn tweak up/down "The Compressor". It works a little like a guitar amp. The default... -
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class.debug.php provide simple functions to set control infos in your code, with many options to output this info in your browser and/or write in a logfile - output of infos in browser, logfile or browser and logfile - (browser) output infos based on a error level - (browser) output infos compact or every message in a new line - (browser) output info based on a special pattern - (browser) output infos marked with special colors (html) - (logfile) log infos based on a error level - (logfile) log infos in a new file each execution, hour, day, week, month or year - (logfile) output infos compact or every message in a new line - (logfile) output info based on a special pattern TODO: - (logfile) create new logfiles based on a deadline - (logfile) create new logfiles based of a filesize - (logfile) create new logfiles based of a date - (logfile) create new logfiles based of a memorylimit look at debug_config to see all options
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WaMoFi
Wa[velet] Mo[tif] Fi[nder]
WaMoFi: Is a method for finding protein motifs using the stored information from statistical contact potentials (aaindex) and the a representation by the continuous wavelet transform. Please use: R 3.1.0 and Matlab 2014 How to use: Just replace the directory and files In the head of the WaMoFi.m script. Then, run it in a matlab console. --dataset: your data set in a fasta file --labels: a file with the label/class per line --percTest: how much of the test will be used for finding the motifs?. ... -
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Bayesian Estimated Core Genome
A pipeline for estimating the core genome of a set of genome sequences
...Jolley KA, Maiden MC. BIGSdb: Scalable analysis of bacterial genome variation at the population level. BMC Bioinformatics 2010, 11:595. 2. van Tonder AJ, Mistry S, et al.Defining the estimated core genome of bacterial populations using a Bayesian decision model. (under review) 3. Krzywinski M, Schein J et al. Circos: an information aesthetic for comparative genomics. Genome Res 2009, 19:1639-1645.
