Search Results for "cluster" - Page 21
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Showing 938 open source projects for "cluster"
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HSRA
Hadoop spliced read aligner for RNA-seq data
...RNA-seq analyses typically begin by mapping reads to a reference genome in order to determine the location from which the reads were originated, which is a very time-consuming step. This tool allows bioinformatics researchers to efficiently distribute their mapping tasks over the nodes of a cluster by combining a fast multithreaded spliced aligner (HISAT2) with Apache Hadoop, which is a distributed computing framework for scalable Big Data processing. HSRA currently supports single-end and paired-end read alignments from FASTQ/FASTA datasets. Moreover, our tool uses the Hadoop Sequence Parser (HSP) library (link above) to efficiently read the input datasets stored on the Hadoop Distributed File System (HDFS), being able to process datasets compressed with Gzip and BZip2 codecs. -
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TensorImage
Image classification library for easily training and deploying models
(Visit our github repository at https://github.com/TensorImage/tensorimage for more information) TensorImage is and open source package for image classification. It has a wide range of data augmentation operations that can be performed over training data to prevent overfitting and increase testing accuracy. TensorImage is easy to use and manage as all files, trained models and data are organized within a workspace directory, which you can change at any time in the configuration file,... -
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DACO-algorithm
A novel transcription factor complex prediction algorithm.
...We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines protein-protein interaction networks and domain-domain interaction networks with the cluster-quality metric cohesiveness. The metric is locally maximized on the holistic level of protein interactions while sophisticated connectivity constraints on the domain level are utilized to account for the exclusive and thus inherently combinatorial nature of the interactions within such assemblies. The original publication can be found on http://bioinformatics.oxfordjournals.org/content/30/17/i415 . -
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Machinehead
Application manager that deploys and maintains set of compose projects
...Machinehead is designed for single-server hobbyists who want to make use of containers and modern GitOps practices but can't since most of the tools (such as kube-applier) focus on cluster technology such as Swarm and Kubernetes. In addition to this lack of tooling, managing sensitive secrets such as database credentials on single-server deployments doesn't have many solutions that integrate with Docker nicely. Machinehead is essentially a background process that is given one or more Git repositories that contain docker-compose.yml files. ... -
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chkit
Desktop CLI client for Containerum
Chkit is a desktop CLI client for Containerum. Before using chkit to work with Containerum you have to specify the address of your API. Use chkit with your own Kubernetes cluster or use chkit with Containerum Online. By default chkit connects to Containerum Online platform. To learn more about chkit commands, please refer to the Docs section on our website. -
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Python/xarray tutorial
Python/xarray tutorial for GEOS-Chem users
If the page is loaded successfully, you should see a Jupyter notebook interface. Then, click on the first notebook to get started. Jupyter combines Python code, execution results, plots, custom texts, and even Latex formulas in a single page. Besides using the Jupyter program, you can also view the static notebook on GitHub (e.g the first notebook). Python is free & open-source so can be easily installed on any machines. To best way to get the scientific Python environment is using the Conda... -
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GPU, a Global Processing Unit
A framework for distributed computing
An extensible framework for distributed computing on P2P grids. We support peaceful free and open research and build an internet supercomputer. We render movies, solve Eternity puzzles, predict climate and improve a ~30 GHz cluster of clients. -
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Kubernetes Guide
Kubernetes Handbook
Kubernetes is Google's open source container cluster management system. It is the open source version of Google's large-scale container management technology Borg for many years. It is also one of CNCF's most important projects. Kubernetes has developed very rapidly and has become a leader in the field of container orchestration. The Chinese information of Kubernetes is also very rich, but it is relatively rare to be systematic and keep up with the community update. -
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Meraculous-2D
Eukaryotic Genome Assembler
...The assembly is driven by a perl pipeline which performs data fragmentation and load balancing, as well as submission and monitoring of multiple task arrays on a GE/SLURM-type cluster or a standalone multi-core server. Manuscripts in submission: https://arxiv.org/abs/1703.09852 https://arxiv.org/abs/1608 -
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SAFMQ: Store and Forward Message Queue, message oriented middleware. Uses include Assured Async Messaging, SOA, Delayed/Batch, and Cluster/Grid Computing. The SAFMQ server provides cross platform communication among C++, PHP, Java, and .NET clients.
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NNC
Nuclear Norm Clustering
We present Nuclear Norm Clustering (NNC), an algorithm that can be used in different fields as a promising alternative to the k-means clustering method, and that is less sensitive to outliers. The NNC algorithm requires users to provide a data matrix M and a desired number of cluster K. We employed simulate annealing techniques to choose an optimal L that minimizes NN(L). To evaluate the advantages of our newly developed algorithm, we compared the performance of both 16 public datasets and 2 real psoriasis genome-wide association studies (GWAS), comparing our method with other classic methods. The results show that our NNC method consistently outperforms other methods due to its higher robustness and accuracy. ... -
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rkt
rkt is a pod-native container engine for Linux
...Security: rkt is developed with a principle of "secure-by-default", and includes a number of important security features like support for SELinux, TPM measurement, and running app containers in hardware-isolated VMs. Composability: rkt is designed for first-class integration with init systems (like systemd, upstart) and cluster orchestration tools (like Kubernetes and Nomad), and supports swappable execution engines. Open standards and compatibility: rkt implements the appc specification, supports the Container Networking Interface specification, and can run Docker images and OCI images. Broader native support for OCI images and runtimes is in development. -
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EvalAI
Evaluating state of the art in AI
...Certain large-scale challenges need special computing capabilities for evaluation. If the challenge needs extra computational power, challenge organizers can easily add their own cluster of worker nodes to process participant submissions while we take care of hosting the challenge, handling user submissions, and maintaining the leaderboard. EvalAI lets participants submit code for their agent in the form of docker images which are evaluated against test environments on the evaluation server. During the evaluation, the worker fetches the image, test environment, and model snapshot and spins up a new container to perform the evaluation. -
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pyspider
A powerful Spider(Web Crawler) system in Python
...Since pyspider has various components, you can just run pyspider to start a standalone and third service free instance. Or using MySQL or MongoDB and RabbitMQ to deploy a distributed crawl cluster. To deploy pyspider in product environment, running component in each process and store data in database service is more reliable and flexible. To deploy pyspider components in each single processes, you need at least one database service. pyspider now supports MySQL, MongoDB and PostgreSQL. You can choose one of them. -
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Dactyl-ManuForm
Parameterized, split-hand, concave, columnar, ergonomic keyboard
This is a fork of the Dactyl, a parameterized, split-hand, concave, columnar, ergonomic keyboard. The main change is that the thumb cluster was adapted from the ManuForm keyboard (geekhack). The walls were changed to just drop to the floor. The 3D printed part is the main keyboard. You can attach a bottom plate with screws. The case has holes for heat-set inserts designed to hold 3- to 6-mm long M3 screws. Then, I used wafer-head screws to connect a bottom plate. If wires aren't dangling, a bottom plate may not be needed. ... -
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Kubicorn
Simple, cloud native infrastructure for Kubernetes
Create, manage, snapshot, and scale Kubernetes infrastructure in the public cloud. Kubicorn will be going through a breaking API change as we adopt the upstream cluster API. kubicorn is a free and open source project that solves the Kubernetes infrastructure problem and gives users a rich Golang library to work with infrastructure. unicorn is a project that helps a user manage cloud infrastructure for Kubernetes. With kubicorn a user can declaratively create new clusters, and modify and scale them. -
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A framework to run MATLAB programs as batch jobs. Features a structured input description, integrity constraints and GUI.Independent parts of a job can execute in parallel on a cluster computer. Developed at Freiburg Brain Imaging (FBI) - http://fbi.uniklinik-freiburg.de/
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swarmprom
Docker Swarm instrumentation with Prometheus, Grafana, cAdvisor
Swarmprom is a starter monitoring stack for Docker Swarm clusters built around Prometheus and Grafana. It collects host, container, and Docker daemon metrics through Node Exporter, cAdvisor, and a dedicated daemon exporter. Grafana dashboards display cluster capacity, node health, service tasks, CPU, memory, storage, network traffic, I/O, and Prometheus performance. Alertmanager distributes alerts, Unsee provides an alert dashboard, and optional Slack settings deliver notifications to a channel. Global services and Docker DNS discovery automatically cover exporter instances added with new nodes. ... -
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etcd operator
etcd operator creates/configures/manages etcd clusters atop Kubernetes
The etcd operator manages etcd clusters deployed to Kubernetes and automates tasks related to operating an etcd cluster. -
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Codis
Proxy based Redis cluster solution supporting pipeline
Codis is a proxy-based high-performance Redis cluster solution written in Go. It is production-ready and widely used at wandoujia.com and many companies. You can see Codis Releases for latest and most stable releases. GUI website dashboard & admin tools. Supports most of Redis commands. Fully compatible with Twemproxy. Proxies can register on zk/etcd, clients can avoid dead proxies, see "High Availability" section. -
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Pyrlang
Erlang node implemented in Python 3.5+ (Asyncio-based)
...It was designed to allow interoperation between existing Python projects and BEAM languages: Erlang, Elixir, Gleam, Luaerl, LFE, Clojerl, and such. With just a few lines of startup code your Python program becomes an Erlang network node, participating in the Erlang cluster. -
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DGRLVQ
Dynamic Generalized Relevance Learning Vector Quantization
Some of the usual problems for Learning vector quantization (LVQ) based methods are that one cannot optimally guess about the number of prototypes required for initialization for multimodal data structures i.e.these algorithms are very sensitive to initialization of prototypes and one has to pre define the optimal number of prototypes before running the algorithm. If a prototype, for some reasons, is ‘outside’ the cluster which it should represent and if there are points of a different categories in between, then the other points act as a barrier and the prototype will not find its optimum position during training. Since the model complexity is not known in many cases, we avoid this problem by introducing a "Dynamic" version of LVQ. Dynamic-GRLVQ (DGRLVQ), which adapts the model complexity to the given problem during training by adding or removing prototypes dynamically/realtime one by one for each category until satisfactory classification results are achieved. -
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MonitorJMX is a very small web application capable to monitor WebLogic Servers/Cluster using a single JMX connection. Two JSP dashboards are available in this first version: servers and jms.
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DC/OS
DC/OS - The Datacenter Operating System
DC/OS (Datacenter Operating System) is an open-source distributed operating system based on the Apache Mesos kernel. It abstracts a cluster of machines into a single logical computer, simplifying the deployment and management of containerized applications and services. DC/OS provides a comprehensive platform for running modern applications with features like container orchestration, service discovery, and scalability. -
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TOFFEE-DataCenter
Linux Server and Data-Center WAN Optimization
TOFFEE-DataCenter is the new TOFFEE variant meant for Data-Center, Server, HPC, Load Balancing, Cluster/Cloud Computing and SDN deployments. With TOFFEE-DataCenter (and or TOFFEE), OEMs and other equipment vendors can make use of this platform/stack, integrate, port and build WAN Optimization devices/appliances on to their existing product range. Or build a dedicated WAN Optimization hardware product series via the same.
