Search Results for "li" - Page 2
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Showing 77 open source projects for "li"
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mirPRo
Tool for miRNA-seq analysis in C++
mirPRo is a tool for miRNA-seq analysis. It can quantify known and novel miRNAs in single-end RNA-seq data and provide useful functions such as IsomiR detection and "arm switching" identification, miRNA family quantification, and read cataloging in terms of genome annotation. mirPRo only works for species that has reference genome. [1] Who are we? Please visit our website http://bioinfolab.miamioh.edu [2] How to cite mirPRo? Shi J, Dong M, Li L, Liu L, Luz-Madrigal A, Tsonis PA... -
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COPEread
Connecting Overlapped Pair-End Reads
COPE (Connecting Overlapped Pair-End reads) is a method to align and connect the illumina sequenced Pair-End reads of which the insert size is smaller than the sum of the two read length.The connected reads can be used in genome assembly, resequencing and transcriptome research. The full citation: COPE: An accurate k-mer based pair-end reads connection tool to facilitate genome assembly Binghang Liu; Jianying Yuan; Siu-Ming Yiu; Zhenyu Li; Yinlong Xie; Yanxiang Chen; Yujian Shi; Hao Zhang... -
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detectIR
Detection of Perfect and Imperfect Inverted Repeats
detectIR - a MATLAB-based tool for detecting perfect and imperfect inverted repeats in genomes. [1] Who are we? Please visit website: http://bioinfolab.miamioh.edu [2] How to cite detectIR? Ye C, Ji G, Li L, Liang C (2014) detectIR: A Novel Program for Detecting Perfect and Imperfect Inverted Repeats Using Complex Numbers and Vector Calculation. PLoS ONE 9(11): e113349. http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0113349 [3] detectIR user manual Please... -
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Pac Quotes
Pac Quotes - A Quotation Website Creator.
Pac quotes is a quotations management software that is coded in two editions, Co-re and Li-te. Li-te Edition: Lite edition is simple and low coded version of Pac Quotes PHP software. Li-te does not requires any type of database and works on simple php code. It stores all its quotations in a text file whoes name can be changed and kept at a secret place to make quotations private and display random quotations one by one on the main site. Co-re Edition: Co-re Version of Pac Quotes PHP... -
The only software you need to increase cash flow, optimize resource utilization, and take control of your assets and inventory.
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LFSpro
Estimating TP53 Mutation Carrier Probability in Families with LFS
Identifying TP53 mutation carrier is critical to people with Li-Fraumeni syndrome for cancer prevention and survival improvement. A new method is needed for clinical counselors because of the limitations of current clinical criteria. LFSpro is built on a Mendelian model and estimates the TP53 mutation probability through Elston-Stewart algorithm with accuracy. Unlike previously used models, our model incorporates de novo mutation rate, which greatly improved estimation accuracy. -
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Gnu Linux OS
gnu linux
Create and development small distros linux and study of your building and configurations. (New name GaenOS) www.gaenos.blogspot.com www.sempreupdate.com.br https://github.com/AngelH4ck3r-LI/Coding Video Extra https://www.youtube.com/watch?v=-r1vQVNI4gk -
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pclstudio-leo-shenzhen
PCL Custom Builds on Windows and Misc Projects
Small projects hosting custom builds of PCL library for windows platform, also contains some projects written/collected by me. Leo Li <a14331990@163.com> Jan 07, 2014 Shenzhen -
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Optimal exploration path
Optimal exploration of grid environments for a realistic robot.
This project provides a resolution algorithm for the optimal exploration problem in the discrete space. Specifically, we define the optimal exploration problem as a classical AI search problem, which is solved with A*. A set of parameters and speedup techniques are proposed in order to balance the algorithm's expected computation time and the solution's quality. For more details, refer to the preliminary paper: A. Quattrini Li, F. Amigoni, and N. Basilico. Searching for optimal off-line... -
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
... interaction analysis for binary traits. Here we present a novel software package GENIE, which utilizes the power of multiple GPU or CPU processor cores to parallelize the interaction analysis. Citation: Chikkagoudar, S., Wang, K., & Li, M. (2011). GENIE: a software package for gene-gene interaction analysis in genetic association studies using multiple GPU or CPU cores. BMC research notes, 4(1), 158. -
Track leads, jobs, and tasks from one easy to use software. You can access your information wherever you are, get everyone on the same page, and grow your business.
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cd-hit
Ultrafast program for clustering large set of biological sequences
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences. CD-HIT was originally developed by Dr. Weizhong Li. CD-HIT is currently maintained by Dr. Li's group at UCSD (http://weizhong-lab.ucsd.edu/). CD-HIT is very fast and can handle extremely large databases. CD-HIT helps to significantly reduce the computational and manual efforts in many sequence analysis tasks and aids in understanding the data structure and correct the bias within a dataset... -
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This is the code used in the experiments of the following paper: Xiaokui Xiao, Bin Yao, Feifei Li: Optimal location queries in road network databases. ICDE 2011: 804-815.
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Charger w Gauge
3.7V Li-Poly Charger
3.7V Li-Poly Charger with battery gauging circuit and PIC control -
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ANDES. This is a library and a set of applications that can be used to analyze the results of deep sequencing results. (See Li et al.: ANDES: Statistical tools for the ANalyses of DEep Sequencing. BMC Research Notes 2010 3:199.)
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Tahoe is General Purpose Database Scheme. It allows for transparent management of persistency issues, data replication between RDBMS, OODBMS and native XML databases. It is ideal for distributed systems and IT projects and perfect for semi-dynamic data li
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A collection of small web applications, for now<BR> <LI>MyReporting </li> <UL>an application used inside a team to report weekly your activity<BR> this has browsing feature, and emailing the reports. </ul>
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comb-needle hotspot evaluation
opnet project for WSN comb-needle model
... in above routing path have to forward a high amount of traffic and become so-called "hotspots", which cost much more energy and typically die at a very early stage. This is an opnet project which evaluates the comb-needle hotspot problem. Author: Endong Tong, Wenjia Niu, Gang Li -
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Bananafonana
Perl extension for Bananafonana encoding / decoding
.../comments.pl?sid=649579&cid=24654733): "ba" "be" "bi" "bo" "bu" "da" "de" "di" "do" "du" "fa" "fe" "fi" "fo" "fu" "ga" "ge" "gi" "go" "gu" "ha" "he" "hi" "ho" "hu" "ja" "je" "ji" "jo" "ju" "ka" "ke" "ki" "ko" "ku" "la" "le" "li" "lo" "lu" "ma" "me" "mi" "mo" "mu" "na" "ne" "ni" "no" "nu" "pa" "pe" "pi" "po" "pu" "sa" "se" "si" "so" "su" "ta" "te" "ti" "to" "tu" "va" "ve" "vi" "vo" "vu" "xa" "xe" "xi" "xo" "xu" "wa" "we" "wi" "wo" "wu" "za" "ze" "zi" "zo" "zu" -
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fropho calculates phonon properties in crystal, which is based on Parlinski-Li-Kawazoe method. Information of forces acting on atoms when an atom is displaced is required as input information. fropho is going to be replaced by phonopy.sourceforge.net.
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This is the high throughput PCR primer design software that is used at the J. Craig Venter Institute. See: Li K, et al. "Novel computational methods for increasing PCR primer design effectiveness in directed sequencing". BMC Bioinformatics 2008, 9:191.
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It's a project to predict peptide fragmentation of mass spectrometry. Check the detail at Anal Chem. 2011 Feb 1;83(3):790-6. On the accuracy and limits of peptide fragmentation spectrum prediction. Li S, Arnold RJ, Tang H, Radivoja
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The Lost Legion (Li-Chien), Programs written in Urdu and Pashtun, Written in C# and Java where that is necessary
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See Li K and Stockwell TB, "VariantClassifier: A hierarchical variant classifier for annotated genomes", BMC Research Notes 2010, 3:191. See our website: http://www.jcvi.org/cms/research/projects/variantclassifier/
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B# (B-sharp) is a battery emulator by Park, Liu, Chou (ISLPED'03, IEEE D&T'05). This is the software that runs on the host PC. It can work with either the B# board or alone as a GUI to Newman's Dualfoil Li-ion battery simulator (iPaq battery)
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Raster Operations Sequence Engine. Geospatial Raster Processing Template Library. A remote sensing raster processing strategies library. Project Member: Li Fenghua (Ellil) e-Mail: el@librose.org