Search Results for "compound" - Page 2
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Showing 82 open source projects for "compound"
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Host LLMs in Production With On-Demand GPUsDeploy your model, get an endpoint, pay only for compute time. No GPU provisioning or infrastructure management required.
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Commandline tool for generating MP3 playlists from ID3 tags. Configured by property file, runs head-less; user can schedule server to generate playlists from compound conditions on a regular basis. Java => "any" platform, but only tested on Win32.
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Mirage
GUI for simplifying Elasticsearch Query DSL
The Elasticsearch query DSL supports 100+ query APIs ranging from full-text search, numeric range filters, and geolocation queries to nested and span queries. Mirage is a modern, open-source web-based query explorer for Elasticsearch. It offers a blocks-based GUI for composing Elasticsearch queries and comes with an on-the-fly transformer to show the corresponding JSON query API of Elasticsearch. Queries can be saved for later reuse. They can also be captured and shared by copying the URL.... -
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Toxmatch
Exploring chemical similarity
...The core functionalities include the ability to compare datasets based on various structural and descriptor-based similarity indices as well as the means to calculate pair wise similarity between compounds or aggregated similarity of a compound to a set. -
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ftdetector
File type detector library
...The signature and mime types lists are stored at simple user-friendly files. This file type detector supports a lot of formats (image, archive, text, documents, audio, video, fonts and others). It also includes Microsoft OLE compound file types. The detector's algorythm has special features to detect text file types like (HTML, XML, JSON, etc.) and text file UNICODE charsets by using their BOMs (Byte order marks). Its small simple interface can be used at the most popular platforms. -
99.99% Uptime for MySQL and PostgreSQL DatabasesCloud SQL Enterprise Plus delivers near-zero downtime with 35 days of point-in-time recovery. Supports MySQL, PostgreSQL, and SQL Server.
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CELLX
Integrates expression, CNV, mutation, compound, and meta data.
CELLX is an informatics infrastructure to manage multi-dimensional genomics datasets containing expression, copy number variation, mutation, and compound sensitivity information. A browser based web page enables an accessible way to visualize, analyze, and download the database data in a pre-formatted table suitable for offline computation. CELLX is presently focused on supporting oncology precision medicine through the evaluation of preconceived hypotheses as well as unbiased, data driven hypothesis generation. ... -
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irayMol
Molecular visualization
Analyses and Interactive visualizations of the structures, functions and actions of biomolecules including molecular surface computation, and protein-ligand interface and protein-ligand docking where the ligand could a small compound, a nucleic acid, membrane and other proteins, written in C++/Qt/openGL/GLSL with more than 125,000 lines of codes. In addition to Qt, the only external library needed is GSL everything else is coded from the scratch. -
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We developed a systematic algorithmic solution for quantitative drug sensitivity scoring (DSS), based on continuous modeling and integration of multiple dose-response relationships in high-throughput compound testing studies. License: The DSS R-package is made available under the terms of the GNU General Public License, which means that the source code is freely available for use within other software, but if you alter the code and distribute it, you must make the new source code freely available as well. This software is distributed in the hope that it will be useful, but WITHOUT ANY WARRANTY. ...
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JarwiseDataAdapter
DataAdapter - Java library to work with Oracle and PostgreSQL database
DataAdapter - Java library to work with Oracle and PostgreSQL database. This library simplifies the work of loading, creating or editing database data, as opposed to working directly with JDBC. In a few lines of code, you get objects relay database table with fields. Object Types fields correspond to types of database table fields. Here you will find similarities with familiar to you ActiveRecord. -
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Here we provide an OpenMS community node for the Thermo Fisher Compound Discoverer, as well as example files and workflows.
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Custom VMs From 1 to 96 vCPUs With 99.95% UptimeLive migration and automatic failover keep workloads online through maintenance. One free e2-micro VM every month.
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FMFilter
Fast Model Based Variant Filtering Tool
...We provide an efficient filtering tool for next generation sequencing data produced by genetic disease studies. FMFilter allows to choose one of the inheritance models (recessive, dominant, compound heterozygous and de novo), the affected and control individuals to design the filtering mechanism. It provides an environment of analyzing these cases by removing the requirement of advanced computer techniques. It has the capability to filter with control individuals and eliminate the majority of the false alarms specific to a population. ... -
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wordaxe (formerly deco-cow): A hyphenation library for Python. Several hyphenation algorithms: - the pattern-based from TeX/OOO, - by decomposition of compound words for German language. Includes support for paragraph line-breaking with ReportLab.
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vcfhacks
simple to use commandline programs for VCF filtering and manipulation
PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/vcfhacks) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/vcfhacks/releases/latest). (relatively) Simple to use commandline tools for the manipulation and analysis of VCF files, geared towards the identification of pathogenic mutations in Mendelian disease. -
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B4 Shaft Selector
Find the arrow that matches you!
Find the arrow that matches you! A quick way to find the arrow you need without having to search in the dozen arrow charts from the different manufacturers! -
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InChI-JNI
JNI wrapper to generate Inchi keys and strings from molecules
Wrapper for Inchi to run the full command-line program in Java. This allows using MOL or SMILES input and generating the keys. A typical execution time is 20 milliseconds per compound A sample java progam is included that reads an SD file and returns the inchi key and string. -
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IRCalc
Interest rate calculator
IRCalc is a sample and functional application written in C# with Visual Studio 2010 and is designed to calculate interest rate, initial amount, final amount, installment amount or even installment quantity. Offering a basic and intuitive layout, user can input values, choose target field for calculation, and choose between "Simple" or "Compound" calculation methods. Includes also a grid table for projection results. -
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VariantMaster
Extract causative variants for monogenic and sporadic genetic diseases
...The algorithm takes into account predicted variants (SNPs and indels) in affected individuals or tumor samples and utilizes the row (BAM) data to robustly estimate the conditional probability of segregation in a family, as well as the probability of it being de novo or somatic. In familial cases, various modes of inheritance are considered: X-linked, autosomal dominant, and recessive (homozygosity or compound heterozygosity). Moreover, VariantMaster integrates phenotypes and genotypes, and employs Annovar to produce additional information as allelic frequencies in general population and damaging scores. -
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Automatic Compound Processing (AuCoPro)
Automatic compound splitting and semantic analysis of compounds
...Specifically, we will explore the possibility to create new knowledge about closely-related languages, and efficiently develop additional, more advanced resources for (a) compound segmentation; and (b) the semantic analysis of compounds; as such, the project will be divided into two interrelated subprojects, to be executed simultaneously. The focus in this project will be on Afrikaans (with Dutch as the closely-related, well-sourced language), which will lay grounds for future work on other closely-related language pairs. -
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Calculates Natural Product(NP)-likeness of a molecule, i.e. the similarity of the molecule to the structure space covered by known natural products. NP-likeness is a useful criterion to screen compound libraries and to design new lead compounds. Maven dependancy: <dependency> <groupId>uk.ac.ebi.cheminformatics</groupId> <artifactId>NP-Likeness</artifactId> <version>2.1</version> </dependency> Required repository: <repositories> <repository> <id>ebi-repo</id> <name>EBI maven repository</name> <url>http://www.ebi.ac.uk/~maven/m2repo</url> <snapshots> <enabled>false</enabled> </snapshots> </repository> </repositories> Latest version of the project is available here in our GIT repo https://github.com/CS76/NP-Likeness
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RootFinder
Comprehensive implementation of a 1D RootFinder framework solution
...RootFinder achieves its design goal by implementing its functionality over several parts: - Root Finder Framework: Framework to accommodate bracketing/open convergence initialization, execution customization/configuration, iterative variate evolution, and search termination detection - Bracket Initialization Techniques - Open Method Convergence Zone Initialization Techniques - Iterative Open Methods - Newton-Raphson and Secant Methods - Iterative Bracketing Primitive Methods: Bisection, False Position, Quadratic Interpolation, Inverse Quadratic Interpolation, and Ridder - Iterative Bracketing Compound Methods: Brent's and Zheng's - Samples - Documentation - Regression Runs - Search Initialization Heuristics -
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JForex2Excel
A bridge between the JForex platform and a spreadsheet (Excel files)
...At the same time, this system could be improved, modified and / or extended by other developers. Of the first objective, was born the OLExcel library, which lets use the OLE Compound File technology (http://msdn.microsoft.com/en-us/library/dd942557.aspx), using the Apache POI library (http://poi.apache.org). OLExcel greatly simplifies the job of creating Excel files using Java through OLE2.0 technology. Of the second objective, was born the JForex2Excel system, that making use of the OLExcel library, send data from the JForex platform to a file in Excel format. -
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math toolkit
A C++ and Python library for finance, statistics and linear algebra.
A lightweight C++ and Python library for finance, statistics and linear algebra. Finance features include compound rate present/future value, annuity, various present/future value coefficients ... Statistics features include mean, median, variance, standard deviation, covariance, correlation, linear regression, probabilities and random variates of various distributions ... Linear algebra features include matrix arithmetic, inverse, determinant, rank, linear system solution, lu/qr decomposition, svd, eigen values/vectors ... ... -
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ParaSim
Parallelized calculation of molecular similarities
Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. -
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Gorp
Easy Video Editor - graphical interface to non-linear video editor
Gorp is an easy-to-use non-linear video editor primarily driven using a graphical interface. It is intended as an entry level tool for video editing, but will provide enough flexibility for more advanced users. Currently it can read and write MPG1 and MPG2 files, and transform them on the way. The number of transforms available is limited, but will grow. View the video flow at any part of the flow diagram, step forward, backward etc to make sure that it is correct. Write your own... -
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The Jupperware library is yet another contain class library, but provides increased support for List-like scalar sequences (boolean, int, float), associative linking, and compound pseudo collections such as Union, Intersection, and Minus (also includes free-standing, matching Iterators).
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ORganic Virtual Library (ORVIL) Program
ORganic VIrtual Library (ORVIL)
...Its particular features are its simplicity to use, portable SMILES format and high speed of library construction. Benchmarking of Tamoxifen (drug for breast cancer) was performed which revealed a compound having similar architecture of known drug analogue, Toremifene. You can access the abstract and full text article here : http://indianjournals.com/ijor.aspx?target=ijor:ijaritac&volume=2&issue=2&article=006
