Search Results for "research database" - Page 17
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Showing 1724 open source projects for "research database"
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LiDSiM
LImits of Detection SImulation for Microbes
LiDSiM is a tool to estimate the possible influence of error-tolerant database searches and proteogenomic approaches on the amount of unidentified spectra and the ratios of taxonomic relationship of identified spectra in MS/MS studies of microbial proteomes. For more details about LiDSiM and its functioning, please see "Estimating the Computational Limits of Detection of Microbial Non-Model Organisms" Mathias Kuhring and Bernhard Y.... -
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Workbench for visualizing biological networks (regulatory, interaction, and metabolic). Can be used as a front-end for BNDB datawarehouses, but also as stand-alone tool.
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The Program to Assemble Spliced Alignments (PASA) is used to automatically incorporate ESTs and full-length cDNAs into gene structure annotations, in the process annotating UTRs, alternative splicing variations, and polyadenylation sites.
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gMol
gMol molecular graphics
We've moved to https://github.com/tjod/gMol/wiki gMol is an interactive visualization system used to display and manipulate 3-dimensional models of scientific data, such as molecular structures and surfaces. It contains both OpenGL and web browser widgets that enable flexible user interfaces. -
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Toolkit to examine the topology of a phylogenetic tree, place amino acid substitutions on specific branches, polarize them and compare amino acid sequences of homologous proteins to answer a wide range of questions about protein evolution.
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Meet#Web is flexible module-based web-solution for organizers of all sorts of meetings from local sessions to international conferences/workshops. Available options are paper submission/review, tutorials, hotel reservation form, invoicing, visa appliance form. Main features include web interface for setup/configuration, collaboration, export, statistics, file uploads, e-mail notifications.
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Immutable Sparse Wave Trees (WaveTree)
Realtime bigdata tool for bit strings up to 2^63 based on AVL forest
Realtime bigdata tool at the bit level based on immutable AVL forest which can be run in memory or, in future versions, as a merkle forest like a blockchain. Main object is a sparse bit string (Bits) that efficiently scales up to 2^63 bits normally compressed as forest has duplicated substrings. Bits objects support reading bit, byte, short, int, or long (Java primitives) at any bit index in 64 bit range. Example: instead of building a class to hold a header and then data, represent all of... -
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CIPPEX is database application to manage potato and sweetpotato field and lab experiments as part CIP's (International Potato Center) research informatics toolset. It has facilities to create field books and facilitate subsequent data analysis.
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Gecko Hamaker
Calculates Hamaker coefficient,interaction free energy,force,torque.
The Gecko Hamaker open-source software project is a full implementation of the fully retarded Lifshitz formulations for isotropic and anisotropic plane-plane and cylinder-cylinder interactions with intervening interlayer materials, planar systems of up to 99 layers, and graded interfaces for the modeling of grain boundaries or other continuously changing systems, accompanied by a database of material optical properties spectra. The machine-readable optical property database is available... -
Train ML Models With SQL You Already KnowBuild and deploy ML models using familiar SQL. Automate data prep with built-in Gemini. Query 1 TB and store 10 GB free monthly.
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Kankin Linux
Distribuição baseada no Funtoo Linux para arquitetura ARM
O Kankin Linux é uma distribuição Stage4 do Funtoo Linux compilado para para uso em hardwares opensource com arquitetura ARM, * Preparada pra compilação distribuída * Sistema de ebuilds Portage, contendo todas as possibilidades de um sistema PORTS based, que só um sistema (Fu|Ge)ntoo faz por vc. :)))))))) * Primeira distribuição Linux Brasileira com releases para hardware opensource com processadores ARM * Suporte a redes DTN (Delay-Tolerant Networking) * Ferramentas da... -
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S-Match
S-Match is a semantic matching framework.
S-Match is a semantic matching framework. S-Match takes any two tree like structures (such as database schemas, classifications, lightweight ontologies) and returns a set of correspondences between those tree nodes which semantically correspond to one another. S-Match contains implementations of the semantic matching, minimal semantic matching and structure preserving semantic matching algorithms. S-Match applies as a solution in many fields, including: information integration,... -
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Pyntrez NCBI Database Client
Command-line, Entrez, NCBI e-utilities client, written in Python
Comman-line client to Entrez, e-utilities, written in Python, developed for Linux -
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ILIAS is a web base learning management system (LMS, VLE). Features: Courses, SCORM 1.2 and 2004, mail, forum, chat, groups, podcast, file sharing, authoring, CMS, test, wiki, personal desktop, LOM, LDAP, role based access, see http://www.ilias.de/
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A database to support large history research projects. This is desktop application focuses on aiding individuals working on large projects like books and dissertations.
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A Windows GUI application for RDF. SWC is a client tool for a Sesame 2 RDF server or SPARQL endpoint, and can be used as a out-of-the-box local triplestore. It offers advanced SPARQL querying and handles Sesame server administrative tasks. This tool is no longer actively maintained as my priorities and interests have shifted away from .Net development. If you are interested in taking over, drop me a line.
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BioExtrac
Support scientific/logistic process to extract samples from a biobank
This application supports the two process scientific and logistic . - register the demand for an analysis - register the targets, load in the database - obtain the best list of samples for those targets (the search can be made with different parameters) - be able to do it again till the list is not satisfied the statistician ( in term of analysis power ... ) - made the list in an excel spreadsheet - upload the list of the picked samples and upload the database - made the list... -
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A simple database designed to allow easy storage and retrieval of Biosort data for C. elegans, but which has a wide potential application for organizing large datasets.
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Kangas Sound Editor
Synthesizer, mixing, sound effects, music composition and production.
This kangaroo-themed program allows the user to create their own music and sound effects, effectively from scratch. There are two variants of the program: Kangas Sound Editor which requires MySQL for its database, and Kangas Sound Editor QI which does not (it uses an internal database - HSQLDB - instead). Kangas Sound Editor (QI) uses a system of boxes or cells, which are placed by the user onto a timeline using drag-and-drop, and which represent entities such as chords, repetition,... -
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NAT Braille
A free universal Braille Transcriber
NAT is a free universal Braille translator. It supports French Braille grade 1, mathematical Braille, Braille layout and reverse transcription. French Braille grade 2, music and other languages are currently under development. -
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DVN
An extended Subversion client enabling versioning of database schemas
...Currently, the client supports PostgreSQL and MySQL database systems. Emphasis is put on the client to be extensible, though, so it is possible to implement a connector for another database system. This project is supported by the Faculty of Informatics, Masaryk University, Brno, Czech Republic, as a research project MUNI33/112013, http://www.muni.cz/research/projects/23565 -
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TUIT
Taxonomic Unit Identification Tool
For the installation instructions please see Wiki page: https://sourceforge.net/p/tuit/wiki/ IMPORTANT: since version 1.0.4.0 TUIT allows to select RDP-like formatted output to improve out of the box compatability with tools, that assume RDP-formatted input. A new field has been added to the properties.xml, please make sure to update it to contain <OutputFormat format="tuit"/> or <OutputFormat format="rdp"/> in the <BLASTNParameters> section. Read our paper in Biotechniques:... -
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The aim of the cardiac atlas project is to establish a structural and functional atlas of the heart. This project is funded by the NIH grant and led by the University of Auckland, New Zealand.
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wreport has moved to: https://github.com/ARPA-SIMC/wreport dballe has moved to: https://github.com/ARPA-SIMC/dballe bufr2netcdf has moved to: https://github.com/ARPA-SIMC/bufr2netcdf
