Search Results for "compute" - Page 17
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Showing 537 open source projects for "compute"
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ParaSim
Parallelized calculation of molecular similarities
...As as special feature, ParaSim allows to store and and to access frequently queried datasets as persistant objects in memory for short response times. ParaSim calculates chemical similarities based on binary structural fingerprints. It does not compute fingerprints by itself but relies on third party software to do so. Basically, all types of structural fingerprints which can be stored in an array of bits (a bitset) can be used by ParaSim. See the Wiki (https://sourceforge.net/p/parasim/wiki/Documentation/) for detailed documentation. FEEDBACK HIGHLY APPRECIATED! -
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POPBAM is a tool to perform evolutionary or population-based analyses of next-generation sequencing data. POPBAM takes a BAM file as its input and can compute many widely used evolutionary genetics measures in sliding windows across a genome.
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Comparison of Cartesian Treecodes
Fortran code to compare particle-cluster and cluster-particle treecode
In molecular simulations it is sometimes necessary to compute the electric potential at M targets due to a disjoint set of N charged source particles. Direct summation is prohibitively expensive when M and N are large. We provide Fortran 90 code for two complementary treecode methods which reduce the cost. The standard particle-cluster treecode partitions the sources into an octree and applies a far-field approximation, while a recently developed cluster-particle treecode instead partitions the targets into an octree and applies a near-field approximation. ... -
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tuda-rsync_install
install method for cluster compute nodes
Tuda-rsync_install is a initrd image containing scripts to partition and rsync a rootfs to compute, or other nodes. A fast, easy and flexible solution not only for HPC systems, although it has been developed for that purpose. -
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Bowling Score
Simple Java project to compute the bowling score
A simple Java project meant to compute the score of a bowling game. Currently implemented: - src/ao.bowling: architecture for the bowling game (a Game can be played by multiple Players, each Player has 10 Frames in which to knock down the pins within 1-3 Throws) - test/ao.bowling: JUnit test cases for a few typical scenarios TODO: - parse&sanitize user input (sequence of numbers representing number of pins knocked down at each throw) - simple swing interface where user inserts data and gets the score - documentation -
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GPDC
Gravity Potential Derivatives Calculator
GPDC is a C file to compute partial derivatives of a gravity potential up to any order by means of an automatic differentiation method. -
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Sailcut CAD is a sail design and plotting software. It allows you to design and visualise your own sail and compute the accurate development of all panels in flat sheets.
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The DetStoch package offers the user two different methods to compute chemical reactions: Deterministic and Stochastic approaches. It allows the user to play with an intuitive GUI framework and compute the evolution rates of the chemical reactions with the different methods available. The results are displayed in graphical plots of the species concentration over the time. The package is designed to solve any of the following reactions by either one of the two approaches mentioned: Synthesis-Decompostion Reaction Chain Reaction Nuclear Chemical Reaction Lodka Model Brusselator Model Furthermore, the Stochastic approach can be computed by several stochastic simulation algorithms. ...
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Robust Correlation Toolbox
Free Matlab toolbox to compute robust correlations
The Robust Correlation Toolbox is a free collection of Matlab functions allowing to visualize data in univariate and bivariate space, check assumptions of normality and homoscedasticity and compute Pearson's and Spearman's, percentage bend, and skipped correlations with bootstrapped confidence intervals - see http://www.frontiersin.org/Quantitative_Psychology_and_Measurement/10.3389/fpsyg.2012.00606/full -- code moved to https://github.com/CPernet/robustcorrtool -
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CapCode is a navigation software for sailors for cruising or regatta. - Reads NMEA 183 data (instruments, GPS, AIS). Implements computation of the VMG , tracing on RNC and ENC (S-57) charts. Display the polar on the chart, future position of the ship. Weather information acquired from grib files are also displayed in the navigation view. developed as an Eclipse RCP in its versions 2.x.x
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Command line / filter tool - Analyze, compute and transform numerical data tables of unlimited length
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Respol: A software package for computing projections of resultant polytopes Description: Respol is C++ software to compute a projection of the Newton polytope of the resultant of a given polynomial system. These are indirectly defined high-dimensional polytopes. Related Papers: [1] I.Z.Emiris, V.Fisikopoulos, C.Konaxis, L.Peñaranda. An oracle-based, output sensitive algorithm for projections of resultant polytopes. International J. Computational Geometry & Applications (Special issue) World Scientific, 2013...
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Rosefinch is a web file manager. Cut, copy, paste, rename and delete and make new folder in browser just like use other file managers on your compute. Also, Rosefinch provides download, upload and search feature. Rosefinch can be an alternative of Ap
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bremsstrahlung
Non-thermal bremsstrahlung c++ routine
A C++ version of the public GALPROP (http://galprop.stanford.edu) routine to compute non-thermal bremsstrahlung, with added features to compute the gamma-ray emissivity either differential or in user-defined bands. -
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Topological Pressure
Software package to compute topological pressure of DNA sequences
This software package computes the topological pressure of a given DNA sequence with respect to a given potential. Details are contained at http://arxiv.org/pdf/1109.5999v1.pdf (specifically equations (2.4)-(2.5)). -
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insol
Computes paleoclimate insolation
R package to compute Incoming Solar Radiation (insolation) for paleoclimate studies. Features three solutions: BER78, BER90 and LA04. Computes daily-mean, season-averaged and annual means for all latitudes. -
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hadronic gamma rays
gamma rays from hadronic processes in astrophysics
Cosmic-ray hadronic interaction matrices for gamma-ray and other secondaries for an interstellar medium target are available as described in Huang et al. Astroparticle Physics, 27, 429 (2007). These require significant effort in practice to compute emissivities for given input spectra. To supplement these matrices I provide here a C++ class which reads the matrices, interpolates on user-defined particle and gamma-ray energy grids, and computes the gamma-ray emissivity either differential or in user-defined bands. A sample user program is provided which can be edited to provide the required functionality. ... -
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SCR caches checkpoint data in storage on the compute nodes of a Linux cluster to provide a fast, scalable checkpoint / restart capability for MPI codes.
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CplexA is a software package (available for Mathematica, Python, and Matlab) to compute probabilities and average properties of macromolecular assembly and its effects in gene regulation.
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QoS Compute
E2E QoS Compute
computing model is: E1 <-NETWORK> E2 method: throught catching RTP packets both in E1,E2, then compare and compute the QoS paras, including Delay, Packet lost, Jitter. -
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An algorithm to efficiently compute the number of products and the commonality of the features modeled by a Feature Diagram
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PLASMAKIN: a chemical kinetics package
A library to compute the electron and chemical kinetics on plasmas
PLASMAKIN is a package to handle physical and chemical data used in plasma physics modeling and to compute gas-phase and gas-surface kinetics data: particle production and loss rates, photon emission spectra and energy exchange rates. -
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Bouc-Wen-Baber-Noori model of hysteresis
Compute parameters of the Bouc-Wen-Baber-Noori model of hysteresis
This toolbox computes the parameters of the Bouc–Wen–Baber–Noori hysteresis model using Multiobjective optimization evolutionary algorithms (MOBEAs). The toolbox uses the NSGA − II algorithm, which is an elitist non–dominated sorting EA. The toolbox uses the original NSGA-II algorithm developed by Prof. Kalyanmoy Deb, which can be download from: http://www.iitk.ac.in/kangal/codes.shtml Prof. Deb allowed me to use and post this toolbox. For further information about the toolbox read... -
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birgHPCC
Rapid CUDA Cluster Deployment
...While retaining the major functions of the original birgHPC, including automated computing cluster conversion and auto slots detection, the new version (birgHPCC) is capable of creating and configuring a compute unified device architecture (CUDA) computing cluster, hence the extra “C” in the name. In addition to the increase in image size (less than 2 gigabytes) and a new Linux base (previously Debian, now Ubuntu), CUDA-capable bioinformatics software programs, such as NAMD, HOOMD-blue, VMD, GPU-HMMER and GPU-BLAST, are pre-installed in birgHPCC, along with the CUDA driver, libraries and software development kit (SDK). ... -
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