Search Results for "throughput" - Page 16

CANGS DB is a user-friendly and stand-alone database tool for processing, analyzing and managing the high throughput sequencing data from 454 amplicon resequencing projects. CANGSDB is very easy to use; it could be installed and used on any UNIX based computer to handle individual as well as multiple sequencing projects. It provides full-fledged flexibility with various options in raw sequence processing and analysis. CANGS DB provides a very powerful data retrieval interface, which enables researchers to retrieve sample information and primers and barcodes information from any individual data set or from a combination of data set. ...

Juggernaut is a high throughput out of core sequence assembly algorithm. This program is very useful in assembly projects involving massive number of short reads which originate from high coverage of the genome.

Yconalyzer is a low-overhead pcap utility that provides a bird's eye view of traffic on a particular TCP port, displaying a distribution of duration, volume and throughput over all connections while being able to narrow down to a connection as well.

NoiseMaker is a program that creates in silico simulated high throughput screening data sets for use in testing and selecting appropriate statistical techniques for quality determination and hit identification.

oTWLAN is a tool to simulate ad-hoc networks. The project facilitates throughput/delay performance study through a GUI based user interface. oTWLAN supports relaying, priority handling of user traffic and the data rates 100k, 1M and 10Mbps.

16s Ribosomal DNA analysis software. It includes a modified version of the Ribosomal Database Project's classification algorithm, as well as chimera detection. It is geared toward high-throughput classification of shorter, next-gen sequence data.

PIP on GT.M is a mature and proven complete FOSS stack for developing transaction processing database applications with superb scalability, transaction throughput & unique functionality for extreme levels of business continuity.

A (UTF-8) Chinese word segmentation program based on ngram language model. It is written in C++, provides multi-threading and high throughput.

Kelp is a desktop genome visualization tool and API intended for custom and locally stored numeric, annotation and sequence data such as generated by high-throughput sequencing and genome-wide assays (microarray, LD, chIP-seq, etc). Linux/OSX/Win, C++/Qt

fpsc is a Fast Parallel Stream Compressor. It can use multiple CPUs to compress (gzip or bzip2) a data stream. (from stdin to stdout) It is built to achieve maximum throughput, everything else (especially memory usage) can be sacrified.

MUMmerGPU is a high-throughput DNA sequence alignment program that runs on nVidia G80-class GPUs. It aligns sequences in parallel on the video card to accelerate the widely used serial CPU program MUMmer.

BoneCP is a Java JDBC connection pool implementation that is tuned for high performance by minimizing lock contention to give greater throughput for your applications. It currently beats all known connection pools, including C3P0 and DBCP.

LeafAnalyser has been developed as a fast throughput leaf shape analysis application. It contains features such as automated image processing, data analysis and interactive 2D/3D graphs.

The Vyper Dynamic Server framework is a pure-java library for use in the creation of backend / server platforms. VDS is specifically tailored for financial applications, and suited for many high-throughput, asynchronous and distributed environments.

Cyrille is an workflow management system aimed at high throughput pipelines in Bioinformatics.

Given a reference sequence, simhtsd will create a large set of short nucleotide reads, simulating the output from today's high-throughput DNA sequencers, such as the Illumina Genome Analyzer II.

The system is designed for the automated analysis of high throughput sequencing data. At present Aped is focused on the analysis of data derived from Sanger and 454 sequencing. Additional functionality exists for SAGE and taxonomic profiling.

Ray improves throughput when many concurrent queries access large scientific databases. Queries are synchronized to access sectors on disk simultaneously so that an arbitrary number of parallel queries can be executed without degradation in performance.

ciperf is used to calculate the -b and -l values for iperf in order to produce a chosen udp packet throughput (overhead = 51 bytes) in respect to some variables which may change the calculation of the parameters (e.g. computers, links, ...).

ArrayPipeLine is a web-based Laboratory Information Management system, using MySQL, Perl CGI and R. It enables high-throughput analysis of microarray data, providing automation of data handling, and rapid creation and implementation of analysis pipelines

The High Throughput Sequence Analysis Pipeline uses freely available bioinformatics tools from NCBI, Phylip, EMBOSS and clustalw to identify and group closely related DNA samples. It can be run on *Nix systems linearly or in parallel using the SGE.

The Functional Annotation and Correlation Tool allows the meta-analysis of data from high-throughput experiments (typically microarrays) by annotating (clones, genes, GeneOntology, location, etc.) and correlating data sets to identify important patterns.

Open Screening Environment is a open source system for management of High Throughput Screening related experiments. The platform consists of new research tools that will enhance significantly management and analysis of HTS data. More information can be f

XAS is a software with graphical user interface to performan analysis of data generated by a high-throughput expression cloning technology using gene expression microarrays.

wunkey (web monkey) is a Linux-based HTTP server written in C, designed to demonstrate modern advances in web server design. It permits scalability by adding cheap PCs, unfair scheduling for increased throughput, and fast serving of dynamic content.