Search Results for "genetic algorithm c" - Page 16
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Showing 1013 open source projects for "genetic algorithm c"
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It is a C# library that implementes most binary tree algorithms such as insertion algorithm, deletion algorithms, and searching a node in a binary search tree. It also can conduct the preorder and postorder traversal functions.
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FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
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This space is not maintained anymore. If you want to get the latest updates on fpocket refer to https://github.com/Discngine/fpocket. Fpocket is a very fast open source protein pocket detection algorithm based on Voronoi tessellation. The platform is suited for the scientific community willing to develop new scoring functions and extract pocket descriptors on a large scale level.
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niGA
Heterogenous Multiprocessor Scheduling Using Genetic Algorithms
Implementation of task scheduling using Genetics algorithm for heterogeneous parallel programming -
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ExactCalc
Software for exact computing based on interval arithmetic.
1/3 is not 0.33. Pi is not 3.14. Actually 1/3 is in interval [0.33, 0.34] and pi is in interval [3.14, 3.15]. During computation truncating error is accumulating. At end of computation it is needed to know real boundaries of result. The solution is given by interval arithmetic. Simply speaking, because 1/3 is in interval [0.33, 0.34] and 1/7 is in interval [0.14, 0.15], value 1/3 - 1/7 must be in [0.18, 0.2]. Computation can be arbitrary long and complex but interval arithmetic gives... -
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...Finally, a part of the library is devoted to artificial intelligence in games and includes a generic alpha-beta algorithm. Each module is provided with an example program.
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ciGen
ciGen is a short C++ code to generate cohesive interface elements.
...user=jCqqCAoAAAAJ&hl=en) when he was at TU Delft and the algorithm is described in the article VP Nguyen, "An open source program to generate zero-thickness cohesive interface elements", Advances in Engineering Software, 2014(74), 27--39. The code was compiled in Ubuntu/Mac OS (a gnu makefile is provided) and Windows (Microsoft Visual Studio). You have to install the library Boost (http://www.boost.org) first. -
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StabLe
An algorithm for learning stable graphical models from data
Stable Graphical Model Learning (StabLe) is an algorithm for learning the structure and parameters of stable graphical (SG) models from data. Stable random variables are motivated by the central limit theorem for densities with (potentially) unbounded variance and can be thought of as natural generalizations of the Gaussian distribution to skewed and heavy-tailed phenomenon. SG models are multi-variate stable distributions that represent Bayesian networks whose edges encode linear... -
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cmotif
A method for mining conditional phosphorylation motifs
...Although several algorithms have been proposed to uncover phosphorylation motifs, the problem of efficiently discovering a set of significant motifs with sufficiently high coverage and non-redundancy still remains unsolved. In this paper, we propose an algorithm called C-Motif for a non-redundant identification of significant phosphorylation motifs. In tests with real data including both non-kinase-specific and kinase-specific phosphorylation data, the C-Motif algorithm successfully reports a relatively complete set of of conditional phosphorylation motifs efficiently. -
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Graphal
Graph algorithms interpreter, IDE, debugger, 3D visualizations.
Graphal is an interpreter of a programming language that is mainly oriented to graph algorithms. There is a command line interpreter and a graphical integrated development environment. The IDE contains text editor for programmers, compilation and script output, advanced debugger and visualization window. The progress of the interpreted and debugged graph algorithm can be displayed in 3D scene. -
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libcontc
Container library in C.
About Collection of data structures and operations that have been (and will continue to be) implemented in response to need. Container interface, naming and behavior is similar to the STL containers. Algorithm interface is in the spirit of the C standard library search and sort functions. Compatibility ISO C99, ISO C++98, ISO C++11. Performance These are designed to be general purpose, and reasonably efficient in most circumstances. Notes The biggest problem with these is type safety due to the use of pointer to void for type abstraction. ... -
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HRSS
Hybrid Relative Specificity Similarity based on Gene Ontology
This software provides a hybrid GO-based semantic similarity algorithm for evaluating the functional similarity between GO terms or gene products. The software uses the pre-downloaded GO database files and the GO annotation files. It allows the users to set organisms, and evidence codes ignored. The software is composed of five modules, getGODAG, getGOAnno, hrssmatrix, hrsstps and hrsspps. -
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yetris
Customizable Tetris(tm) clone on the terminal
yetris is a customizable Tetris(tm) clone for the terminal. It has some features found on modern adaptations and aims to please both casual players and Tetris(tm) enthusiasts. It has full textual interface. yetris was originally developed in C, now reprogrammed in C++ with ncurses. It runs on pretty much every terminal around here, but it's limited to POSIX systems. -
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kmul
Constant multiplication routine generator
...In order to calculate a constant integer multiplication, it uses the public domain routines presented in the work: Preston Briggs and Tim Harvey, "Multiplication by integer constants," Technical report, Rice University, July 1994. This technical report implements Bernstein's algorithm documented in: R. Bernstein, "Multiplication by integer constants," Software - Practice and Experience, Vol. 16, No. 7, pp. 641-652, July 1986. kmul can be used for emitting a NAC (generic assembly language) or ANSI C implementation of the multiplication. -
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Evochumps
Evolving recursive artificial neural networks in a simulation.
...It has a built-in evolutionary algorith to let the brains evolve conditoned to selective pressure. The program's interface allows you to manipulate all kinds of parameters of both the simulation, the genetic algorithm, and each particular RNN in real time. -
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Genetic data converter
Convert genetic data for hapmixmap software
Genetic data converter, for hapmap.org and hapmixmap data formats. Reads data in tabular format and writes in hapmixmap format. It's possible to add extensions to output different data formats. -
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PyGAO
Genetic Algorithm Optimization for Python
A simple interface for performing genetic algorithm optimization for numerical problems. I am starting with a stripped-down version, where a solution can be described using a single vector of float numbers. Eventually, I will expand to more generic data structures and add multiple-species search options. For the time being, I have no plans of developing a GUI. For now, this is strictly a computational module. -
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Sudoku MEA Solver is projet of desktop Sudoku automatic solver aplication written in C++ with using Qt4. It's based on my batchelor thesis project (Multiagent Evolutionar Algorithm for Sudoku).
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ABM-Calibration-SensitivityAnalysis
Codes and Data for Calibration and Sensitivity Analysis of ABM
...<http://jasss.soc.surrey.ac.uk/xx/x/x.html> Methods/Techniques used are: a. Parameter fitting: 1. Full Factorial Design 2. Simple Random Sampling 3. Latin Hypercube Sampling 4. Quasi-Newton Method 5. Simulated Annealing 6. Genetic Algorithm 7. Approximate Bayesian Computation b. Sensitivity Analysis: 1. Local SA 2. Morris Screening 3. DoE 4. Partial (Rank) Correlation Coefficient 5. Standardised (Rank) Regression Coefficient 6. Sobol' 7. eFAST 8. FANOVA Decomposition Have also a look on our other projects: http://www.uni-goettingen.de/de/315075.html -
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ALCHEMY is a genotype calling algorithm for Affymetrix and Illumina products which is not based on clustering methods. Features include explicit handling of reduced heterozygosity due to inbreeding and accurate results with small sample sizes
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SilentEye is a cross-platform application design for an easy use of steganography. It provides a pretty nice interface and an easy integration of new steganography algorithm and cryptography process.
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HyCuda
Hybrid Framework Generator for CUDA
The HyCuda code-generator generates a template framework to easily compile different versions of a hybrid algorithm. When set up, you can switch between devices to execute part of the algorithm without having to worry about memory transfers. Based on a specification file that describes some properties of the algorithm, HyCuda generates C++11 header- and sourcefiles, only a few of which have to be modified by the programmer in order to implement the algorithm itself. ... -
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GENIE (GEne-geNe IntEraction)
GPU based Parallel Gene-Gene Interaction Analysis
Gene-gene interaction in genetic association studies is computationally intensive when a large number of SNPs are involved. Most of the latest Central Processing Units (CPUs) have multiple cores, whereas Graphics Processing Units (GPUs) also have hundreds of cores and have been recently used to implement faster scientific software. However, currently there are no genetic analysis software packages that allow users to fully utilize the computing power of these multi-core devices for genetic... -
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Teachmar
Program that helps learning foreign words and phrases
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NNBrain
A free, open source collection of neural network based AI agents.
NNBrain is a free and open source collection of artificial intelligence agents. These agents have applications in video games, research, business, and more. The included agents function in both discrete and continuous action and state spaces.
