Search Results for "compute" - Page 16
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Showing 537 open source projects for "compute"
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JCycles
[frozen] A library for computing cycles in graphs or in Java code.
[This project is frozen, but has an offspring with more features: https://github.com/jeffhain/jadecy ] JCycles provides treatments to compute cycles, or just strongly connected components, in directed graphs in general, or in classes or packages dependencies graphs parsed from class files (major version <= 51, else does best effort). It uses Tarjan's algorithm for SCCs, and Johnson's for cycles, with continuations instead of recursion, which allows to handle large graphs (< Integer.MAX_VALUE vertices). ... -
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ThunderstormDistributor
Distribute jobs to compute nodes on dynamic clusters
ThunderstormDistributor is a queuing system that distributes jobs and computational workload across dynamic clusters in the cloud. It manages the assignment of jobs to maximize CPU and memory usage and prevent oversubscription of compute nodes. It also performs advanced statistics collection on individual compute nodes and jobs to graph the distribution of disk, network, CPU, and memory usage over time, which facilitates the advanced optimization and tuning of computational workflows. -
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etm provides an intuitive format for using plain text files to store data, a command line interface for viewing data in a variety of convenient ways and a GUI interface for both viewing and modifying data. Repetition and alerts are supported .
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PageRank for wikipedia
PageRank algorithm for wikipedia pages on Amazon Elastic MapReduce
• Implemented the project using PageRank algorithm for Wikipedia pages on Amazon Elastic MapReduce. • Designed MapReduce jobs for red links removal, outlink adjacency graph, compute the total number of pages, PageRank calculation, sorting of PageRanks. • To run the project on amazon Elastic MapReduce specify jar location. Pass the directory locations as an argument of input and output respectively. -
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Error Propagation Calculator
Easily propagate measurement errors through mathematical operations.
Error Propagation Calculator is essentially a cross-platform GUI front-end for the Python Uncertainties library that does not require knowledge of Python to use. Simply point and click to enter values and errors, input your expression and press compute. The program evaluates native Python code, but the user does not need to know the syntax as common operators are provided as buttons, similar to a scientific calculator. -Evaluate expressions with as much as 26 different variable and error pairs. -Copy output to the system clipboard by simply double clicking the output field. ... -
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RainforestCluster
Dynamically manage Amazon EC2 clusters
RainforestCluster is an Amazon EC2 python program that manages and load-balances dynamic clusters to allow for maximum workflow flexibility and speed at minimal cost. It enables one to quickly and cheaply create dynamic compute clusters in the cloud, which can then run computational pipelines generically. It is also able to optimize the use of spot instances - idle computers in Amazon's cloud that are available at drastically reduced cost (5x-10x cheaper) - but can be terminated at any moment if capacity drops or the bid price rises. It also provides pre-installed features such as GlusterFS distributed filesystems, ThunderstormDistributor queuing system, RAID 0 /scratch, password-less ssh, and automatic cluster management, for ease of use and maximum processing speed for computational tools. ... -
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Portfolio management GUI for fixed income securities. The program compute the present value, duration, convexity, yield to maturity of the portfolio according to the specified term structure. The term structure can be modified then the portfolio characteristic will be updated accordingly. The program need Microsoft Visual C++ 2010 Redistributable Package (http://www.microsoft.com/en-ca/download/details.aspx?
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Compute minimum variance portfolio according to prices available in csv format. The program need Microsoft Visual C++ 2010 Redistributable Package (http://www.microsoft.com/en-ca/download/details.aspx?id=5555)
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IterInt is a numerical integration package that implements iterated numerical integration methods. Iterated methods can be used to compute low dimensional (less than ten, for example) integration problems to get very accurate results.
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The sequence alignment task in MAGI (magi.ucsd.edu) is based on the miRanda algorithm, but we redesign the miRanda algorithm on GPU by taking its advantages of massively parallel computing and extra high memory bandwidth using using NVIDIA’s Compute Unified Device Architecture (CUDA). The CUDA-miRanda implementation is a fast microRNA target identification algorithm that aligns short nucleotide sequences (i.e., < 32 nucleotides) against longer reference sequences (e.g., 20k nucleotides). It has the ability to report multiple alignments and the corresponding traceback sequences for any given query-reference pair with up to 166x speedup on 4 GPUs compared to regular CPUs.
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Chmuk
GPS data visualisation and exploration
A really wonderful software to visualise and analyse GPS traces in many different ways (speed and elevation variation, etc.), with different background maps (hiking map, road map, orienteering map, aerial image, cycling map, etc.). It is possible to make KML exports. -
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jStyleParser
Java CSS parser and DOM style assignment library
...It has its own application interface that is designed to allow an efficient CSS processing in Java and mapping the values to the Java data types. It is also able to apply the parsed style sheets to a DOM that represents an HTML or XML document and to compute the resulting style of the individual document elements. It supports CSS 2.1 and a large subset of CSS3. -
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Mpaxs
Transparent Local and Remote Parallelization for Java
Mpaxs provides a simple abstraction for executing Callables and Runnables either locally within the same Virtual Machine, on the same host via RMI, or on remote machines, also via RMI. It supports launching of new compute hosts via an extensible API, currently featuring local compute host launching and grid compute host launching using the DRMAA API. -
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Chemical Reaction
Balance chemical reaction and compute material balance
This Python program is used to balance a chemical reaction and to compute the material balance. Furthermore, it's able to check molecules and to write the condensed strutural formula from the name of an organic molecule. (Those both functionalities are still limited.) -
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Runge
Runge is an Interactive Solver for Systems of Differential Equations
...It allows you to start a solution by mouse click on a plane. It's precise. It uses Runge Rule to adjust step length to satisfy required precision on each step. It's effective. When it needs to compute derivatives (Jacobian matrix, for example) it does that analytically, i.e. without using numerical methods. It's portable. It works on Windows and Linux 32 and 64 bit and Mac OS X 64 bit. It's open. It allows you to implement and embed your own algorithms (aka "solvers"). It's easy to use. It allows to export results to MS Excel and MATLAB. ... -
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libpHtools
The pHtools C API
This library allows C programs to search and query pHtools buffer databases as well as compute the acid/base buffer properties of mixtures. -
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vonMises
Package for dealing with the von Mises periodogram
...The von Mises periodogram is a data-analysis period-search tool that models the periodic signal with the so-called von Mises function, K exp(nu cos x). The package can be used to compute the periodogram itself, as well as its detection significance levels. It can also perform some Monte Carlo simulations of the periodogram. The details of the theory are given in the following refereed paper: Baluev R.V., 2013, MNRAS, V. 431, P.1167-1179. The version 1.0 uploaded here is the same package as the one that can be downloaded along with the above paper as "Supporting information". ... -
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Hy3S uses advanced MPI parallelized hybrid stochastic simulation methods to quickly compute the dynamics of biochemical networks with thousands of species/reactions. Many features included (see Home Page). An easy-to-use GUI (Matlab req) is included.
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PASHA: Parallelized Short Read Assembly
One of the fastest parallel short read assemblers for large genomes.
PASHA is a parallel short read assembler for large genomes using de Bruijn graphs. Taking advantage of both shared-memory multi-core CPUs and distributed-memory compute clusters, PASHA has demonstrated its potential to perform high-quality de-novo assembly of large genomes in reasonable time with modest computing resources. Our evaluation using three small real paired-end datasets shows that PASHA is able to produce better assemblies with comparable genome coverage and mis-assembly rates compared to three leading assemblers: Velvet, ABySS and SOAPdenovo. ... -
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BriCS
SaaS for running simulation models in the cloud
The Bristol Cloud Service simulation runner is a cloud computing Software as a Service designed to enable users to quickly launch simulation code on Amazon AWS' Elastic Compute Cloud (EC2). BRiCS is written in Python using the Django framework and interacts with EC2 using the boto API. BriCS enables multiple simulation runs to be launched in parallel from a web browser. Model configuration (parameters) files are uploaded via the browser and results files are downloadable on completion. BriCS enables researchers with software simulation models to access the rapid scale out opportunities of the cloud. ... -
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finiteDiff
Program for solving the Schrödinger equation
This little set of programs compute the solutions to one and three dimensional Schrödinger equations with different potentials. Explicit, implicit and eigenvalue methods are included. The explicit and implicit method are provided in C++ whereas the matrix method is implemented as a MATLAB scipt. All these method use finite differences. -
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Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.
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KB1OIQ - Fl_MoxGen
Compute Moxon Rectangle antenna dimensions
Fl_MoxGen is a program which will compute the dimensions of a Moxon Rectangle antenna when given the desired frequency and diameter of the construction material (typically wire). It also generates PDF and xnec2c outputs. Please note that this software is also distributed within the "Andy's Ham Radio Linux" software collection.
