Search Results for "compute" - Page 15
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Showing 537 open source projects for "compute"
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lustre-roll
lustre client roll for rocks clusters
This roll provides rpm packages to mount the lustre filesystem on the frontends and compute nodes of a rocks cluster. Please contact me if you need this roll for another kernel and/or lustre version. -
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Gryptonite
Cross-platform encrypted password and file database
A user-friendly, cross-platform utility for managing and accessing your most secret data. It stores passwords and whole files, so it can literally store any information you want to keep secret. Access your most-used passwords/URLs right out of a desktop tray icon. For advanced users, it includes a separate utility called Grypto-Transforms, which has a universal hash calculator with all the major hash functions, generic encrypt/decrypt functions and a base64/hex converter. It's not just... -
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LightCAS
LightCAS is very lightweigth Computer Algebra System
LightCAS is lightweight Computer Algebra System. Its size is less that 50K of compiled code. LightCAS can parse, display, evaluate and simplify mathematical expressions. It can also compute derivatives, find solutions of one or second order expressions, solve systems of equations, compute Taylor series. Its code is intended to be full configurable for most applications. -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
Forked Ubuntu 14.04 minimal install with XOrg and FluxBox desktop environment for web-based pipeline construction and job submission. HOWTO: 1) Set VM network settings to a bridged adapter type. 2) Load VM to client 3) From host: $ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure' --- passwd = 616287xx 5) or ssh into host with X forwarding, and type runme This will launch an X-session of Firefox on the client, which will then be forwarded to the host. The... -
Add Two Lines of Code. Get Full APM.Works out of the box for Rails, Django, Express, Phoenix, and more. Monitoring exceptions and performance in no time.
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Cluster Bench is a framework to support a range of benchmarks and system tests for cluster systems. It automatically generates the required files for a batch system and can graphically display the results of completed benchmarks and other tests.
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fep1d
a script for the analysis of reaction coordinates
...The script allows one to construct conventional and cut-based free energy profiles, to assess the optimality of a reaction coordinate, to inspect whether the dynamics projected on the coordinate is diffusive, to transform (re-scale) the reaction coordinate to more convenient ones, and to compute such quantities as the mean first passage time, the transition path times, the coordinate dependent diffusion coefficient, etc. -
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DR14 T.meter
Compute the DR14 of a given audio file according to the procedure desc
Introduction to DR14 T.meter DR14 T.meter is a free and opens source command line tool for computing the Dynamic Range of your music according to the procedure used in the off-line meter released by the Pleasurize Music Foundation. This tool is very useful to measure how is loud your music and for understanding that a good quality album always has also a good dynamic, and it's also useful for understanding the effects of the so called loudness war. Dr14 t.meter is released under the... -
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This is a project which aims to create a theorical model for trajectories of airsoft bb's, and to compute them.
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Model Railroad System
The Model Railroad System can help you run your railroad.
...Software to create switch lists for freight car forwarding and creating timetables for your railroad are included. There is software to help with photographing of your trains and to compute the correct value for those pesky dropping resistors for LEDs and/or incandescent lamps. If you have a model railway, large or small, this software package will help you out. -
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A multi-platform tool to convert RSA private keys between SFM format (modulus, public exponent, private exponent) and CRT format, in both ways.
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A collection of projects I have developed in the past years. It contains: - a tool to compute height and angle of objects above horizon - a proof of concept of DFT and DWT to reduce audio files - a quantitative library with OOorg interface for Calc
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InChI-JNI
JNI wrapper to generate Inchi keys and strings from molecules
Wrapper for Inchi to run the full command-line program in Java. This allows using MOL or SMILES input and generating the keys. A typical execution time is 20 milliseconds per compound A sample java progam is included that reads an SD file and returns the inchi key and string. -
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dna-bison
Bisulfite alignment On Nodes of a cluster
Bison allows users with access to a computer cluster to rapidly align whole-genome bisulfite sequencing or RRBS reads. It can align both directional and non-directional libraries and uses bowtie2. Multiple compute nodes are not absolutely required, but will make the alignment process faster. Further details available on the Wiki page. Help also available on SEQanswers (http://seqanswers.com/forums/showthread.php?t=31314) or by creating a ticket here. You can now track the development on github (https://github.com/dpryan79/bison). ... -
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TIDES
Taylor series Integrator for Differential Equations
Taylor series Integrator for Differential EquationS. This software is developed by Profs. A. Abad, R. Barrio, F. Blesa and M. Rodriguez, (GME, University of Zaragoza, Spain). It consists on a C (Fortran) library, libTIDES, and a Mathematica package, MathTIDES. (MathTIDES requires Mathematica version >= 7.0) . Basic references: * A. Abad, R. Barrio, F. Blesa, M. Rodriguez, 2012. Algorithm 924: TIDES, a Taylor series Integrator for Differential EquationS, ACM TOMS. 39, no. 1, art. 5.... -
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GENBLOSUMxx
GENBLOSUMxx-Generation of BLOCK substitution Matrix xx
DESCRIPTION: Program: GENBLOSUMxx-Generation of BLOCK substitution Matrix of least Identity Score xx Version:version 1 Author:Rifat Nawaz UL Islam, Arnab Nayek, Buddhadev Mondal, Shyamashree Banerjee, Parth Sarthi Sen Gupta and Amal Kumar Bandyopadhyay* Department of Biotechnology, The University of Burdwan -
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MNCubes
Research project to compute repeating patterns in discrete planes
A 2D line can be rasterized into a 8-connected sequence of pixels which exhibit repeating patterns of connected pixels. Likewise, a 3D plane can be rasterized into connected cubes. A 'rectangular' cut of m x n cubes is a (m,n)-cube. Given m and n, the goal of this project is to generate all the (m,n)-cubes for all the (integer) discrete planes, based on the intersection vertices on a Farey diagram. -
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SPINdle is a logic reasoner that can be used to compute the consequence of defeasible logic theories in an efficient manner. The current implementation covers both the basic defeasible logic and modal defeasible logic.
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ProgrammingAssignment2
Repository for Programming Assignment 2 for R Programming on Coursera
...It builds on a worked example that caches the mean of a numeric vector, demonstrating how the operator preserves state across function calls. You then implement analogous logic for matrices via two functions, one to construct the cache-aware object and another to compute or retrieve the cached inverse. The instructions emphasize using solve for inversion and assuming that the supplied matrix is always invertible. The repository outlines the workflow for forking, editing the provided R stub, committing your solution, and submitting your repository URL as the final deliverable. -
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Octree Method For Particles
simulation of particles using an oct-tree
...combine this with the fact that it's an O(N) algorithm, and what you get is an accurate particle-based physics simulator whose simulation speed scales with the number of particles per compute unit even for VERY large particle counts and VERY large computing arrays. In a phrase, simulation on a massive scale! -
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JbiLoan
Simulate a loan from its rate, amount and duration
Open source simulator of loans. Loans depend on 3 data : the amount to borrow, the bank rate, the duration. But sometimes, you want to compute one of these data, knowing 2 of them only, plus the monthly payment. That's exactly what JbiLoan is made for! Moreover, this tool allows you to compute the full simulation of the loan, including the insurance rate and the bank expenses. And finally, it displays the real/effective rate and compares the loans together, so that you know exactly which one is really the cheapest! -
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Truncated power series algebra
Truncated power series algebra
This project consists of two object-oriented implementations of truncated power series (TPSA) for arbitrary order and number of variables. Addition, subtraction, multiplcation, division, and exponentiation are all implemented in the algebra as overloaded operators. They can also compute with maps, a map being an array of TPSA objects representing a mapping of a space into itself. They are implemented as arrays of TPSA objects equal in number to the number of variables of the algebra. One implementation is written in Mathematica and is rather slow. The second is written in VB.net and is much faster. -
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Ogljpeg
JPEG decompression accelerated on GPU using OpenGL compute shaders
Ogljpeg is JPEG decompression library. Primary focus of this project is to speed up texture upload process using JPEG compression. For this purpose OpenGL compute shaders are used and result of decompression is OpenGL texture loaded in GPU memory. -
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MolSig
The Stereo Signature Molecular Descriptor
An algorithm to compute molecular graph descriptors considering the stereochemistry of the molecular structure, based on our previously introduced signature molecular descriptor. The algorithm can generate two types of descriptors, one which is compliant with the Cahn-Ingold-Prelog priority rules, and a faster one based on our previous definition of a directed acyclic graph that isaugmented to a chiral molecular graph. -
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MIST
A MATLAB toolbox to simulate optical systems
Modal Interferometer Simulation Tool (MIST) is a MATLAB toolbox that can simulate arbitrary resonant optical systems in the paraxial beam approximation. It allows the user to define any optical setup (composed typically of laser sources, mirrors, lenses, electro-optical modulators and detectors) and to compute the static laser field at any point. It uses a Hermite-Gauss modal decomposition to simulate diffraction limited optics. This tool is being developed mainly for simulation of large scale interferometers with resonant cavities used for the detection of gravitational waves. Subscribe to the mailing list for updates and news. ... -
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jrdistribution
Combines R console with GUI for analysis of probability distributions.
JRdistribution project is an attempt to combine a convenient GUI with the power of R language to compute probability distributions' parameters. We provide a dozen of probability distributions which you can analyze changing their parameters using both graphical interface and R console. Using the menu, any time you can get some useful output, e. g. expected value or probability density plot. You are also able to perform more complex computing being provided R console waiting for your orders.GUI and R console are connected and you can change the probability parameters in the graphical interface and then use them in your script. ...
