adLIMS: a Laboratory Information Management System with ADempiere
Many biological laboratories dealing with genomic samples are facing the problem of sample tracking, both for pure laboratory management and efficiency, and for internal policies, such as Good Laboratory Practices (GLP). Our laboratory exploits PCR techniques and next-generation sequencing (NGS) methods, to perform high-throughput integration site monitoring in different clinical trials and scientific projects, based on the delivery of therapeutic genes by viral vectors integrating into the genome of target cells. We process around 1500 samples/year resulting in hundreds of millions of sequencing reads, requiring automation and posing new challenges in data storage, monitoring of sample process and computational tools for analyses. Thus we need to standardize data management and tracking systems, built on a scalable, flexible structure with an easily accessible and web based interface, what is usually called Laboratory Information Management System (LIMS).
Back to the 2 Dimensions in a arcade car driving game :a road and plenty of things to see and overtake ! Written in java without OpenGl,the source code is available.
JDraftPDF is a tablet based PDF annotator and editor. The software allows annotations to be made directly to a PDF file using a tablet and pen. The main application is for annotating document drafts without the need for printing.
JECmate is an application to help manage chess games played by mail or email. Written in Java it will support the creation of messages and the sending of those messages by email. It may also be used as an interface to third-party chess engines.
This project is the development of a Selection Tool primarely used in ImageJ and possibly in GIMP. It is based in LiveWire and SNAKES methods and will firstly be used in IVUS (intravascular ultra sound) images.
A MIDP2 implementation which targets free JVMs.
joPAS is a java to octave bridge. Octave is a MATLAB syntaxis compatible program. You can execute octave commands from java and do graphical representations. This sdk have been developed by the PAS group of the University of Deusto.
Star Trek™ stardate in your system tray!
Stardate System Tray is a desktop widget which displays the current stardate (and other chronologies) in a tray icon. Suitable for any platform with Java 6 or better. An Ubuntu version can be found at https://launchpad.net/~thebernmeister/+archive/ppa.
SDK for Resident Evil Games
SDK for Resident Evil Games, this SDK will feature a multitude of applications. Our goal is for the user to be able to do a multitude of tasks across the original resident evil trilogy. Everything from editing room boundaries to event scripting and even 3d modelling.
This is a handy utility which monitors the status of Hudson or Jenkins (a Continuous Integration tool). It reads the RSS feeds, and sits in your system tray. Checkout http://hudsontracker.sourceforge.net/index.html for more info and screenshots.
nTorrent - A graphical user interface client to rtorrent (a cli torrent client) written in java. nTorrent can administer a rtorrent process over a network and allows several clients. Take a look at the project website for more info.
GuitarTeX2 is based on the idea of Chord. It takes a Chord file containing Chordpro directives to produce good-looking and easy-to-play song sheets for guitarists in PostScript or PDF format. GuitarTeX2 is a further development of GuitarTeX.
iSNS is an interactive neural network simulator written in Java/Java3D. The program is intended to be used in lessons of Neural Networks. The program was developed by students as the software project at Charles University in Prague.
Klondike solitaire game written in Java Swing/AWT by two first year computer science/engineering students for a school project.
The world's most advanced CNL reasoner
Despite centuries of exhaustive research, the theory of evolution still hasn't provided a satisfying explanation for the origin of intelligence and language. According to the biblical world view, God has created laws of nature. Being based on the Laws of Intelligence embedded in Grammar, only Thinknowlogy implements the natural meaning (intelligent function) of words like definite article “the”, conjunction “or”, possessive verb “has/have” and past tense verbs “was/were” and “had”. It is demonstrated by: • Programming in natural language; • Reasoning in natural language: - drawing conclusions (more advanced than scientific solutions), - making assumptions (with self-adjusting level of uncertainty), - asking questions (about gaps in the knowledge), - detecting conflicts and some cases of semantic ambiguity, - displaying of justification reports for the self-generated knowledge; • Multilingualism, proving: Languages have one common origin.
Dioscuri is an x86 computer hardware emulator written in Java. It is designed by the digital preservation community to make sure that documents and programs from the past can still be accessed in the future. Dioscuri is durable and component-based.
JCalc is a large Calculator written in Java. It support the standard basic opations (+,-,*,/) and the scientific calculator (sin, cos, tan, sqrt, ...). Calculate and translate with the different numbering systems. And it can solve simple equations.
This program draws randomly about 100 types of fractals. Program realized on C++ (as screensaver and as standard window application) and on Java (as applet and image store application).
The BlueFusion package consists of a Java SocketServer and a Flash Client which can execute basic file functions such as write to files, delete files, copy files from within Flash. It is designed for XML-Files but can handle all types of plain text.
Calculation of camshafts - allows to define a camshaft profile on the set trajectory which should provide the given mechanism. The trajectory can be set graphically, co-ordinates or function.
Crystal Saga is a full screen 2D RPG programmed in JAVA. The main features are a real-time side view battle system, intuitive menu system, tiled world maps and towns, and a captivating story line.
small, fast, java messenger
Ice Messenger is a small Chat, where you talk about something with your friends our other people. Ice Messenger you can allready use at your office and other places. It has written in Java and so you can use it one all platforms which can use Java. Here are a few: Windows, Linux, Unix, Solaris, Macintosh and more. This application is in the first version and so it has much of errors and other bugs! Describe your bugs and errors in the forum.
An application that decodes and plays MPEG-1 elementary video streams. Written entirely in Java.
A very simple java simulation of the human body to simulate a 3D drawing manikin,with plenty of freedom of movements of the limbs and rotation of the body to implements a 360 degrees view.Source code available.No openGL.Improvements to come !
A plugin for segmentation and analysis of images of vascular networks.
A plugin package for ImageJ that assists with quantification and characterization of vascular networks. The tool regularizes lighting, segments the vessels, and generates a skeletal description that reflects the biological structures of interest.