The product of RapidASDev project is Rapid Application Service Development - RASD environment. It is based on cloud techniques and can be treated as development tool as a service. With RASD you can create your own applications or even system's. All you need is internet browser. The program you create is published as HTML5 service or REST service. All subprograms (look up's, ...) are published as HTML5 or. REST too. If you create batch program in PL/SQL you can use the same tool. All generated code can be overwritten with using triggers ON, PRE an POST (remember classical Forms) The best thing is that the development cycle is really fast. In few minutes you can have working prototype for users to discuss about their requirements.
Toxicity prediction for chemical compounds
A GUI application which estimates toxic hazard of chemical compounds. The latest version includes the following toxicity prediction modules: -Cramer rules (oral toxicity) -Toxicity mode of action via Verhaar scheme -Skin irritation and Eye irritation prediction -Benigni / Bossa rulebase for mutagenicity and carcinogenicity prediction -START biodegradation and persistence prediction -Skin sensitisation reactivity domain -Kroes TTC Decision tree -SMARTCyp - Cytochrome P450-Mediated Drug Metabolism and metabolites prediction -Structure Alerts for the in vivo micronucleus assay in rodents (ISSMIC) -Structural Alerts for Functional Group Identification (ISSFUNC) -Structural alerts associated with covalent protein binding and DNA binding. - Ames mutagenicity Toxtree provides a plugin framework to incorporate different approaches to the estimation. Platform independent (written in Java), with the use of The Chemistry Development Kit.
Open pharmacovigilance data extraction, mining and analysis tool
OpenVigil provides a webinterface to analyse pharmacovigilance data, i.e., spontanous or systematic collections of treatments (drugs) and observed adverse events ("drug side effects"). FDA Adverse Event Reporting System (AERS) and other pharmacovigilance data (e.g., Canadian or German) are supported. The OpenVigil web-based analysis tools offer several analysis modes like extraction, filtering, mining of data and analyses via measurements of disproportionality like proportional reporting ratio or reporting odds ratios) and export to spreadsheets programs like Microsoft Excel or statistics programs like R. OpenVigil 1 operates on raw data, OpenVigil 2 on cleaned data (using drugbank.ca and drugs@FDA), OpenVigilFDA uses the official FDA online API. OpenVigil 2 supports query for ATC codes or certain chemical moieties. Other tools of the OpenVigil project include a calculator for measurements of disproportionality for a 2x2 contingency table and a drugname mapper using RxNorm.
Obsolete project - archived at https://github.com/darrenleeweber/bioelectromagnetism This is a public release of a Matlab toolbox for working with data from electroencephalography (EEG/ERP) and magnetic resonance imaging (MRI). It contains functions to process and visualize ERP/MRI data and associated electrode positions.
Open Information Systems for Emergency Services (Open ISES) is a community of software developers, paramedics, EMTs, law enforcement & fire fighters working together to create open source software & training materials for the emergency service community.
A very efficient tutor.
A touch typing tutor very flexible, supporting customizable keyboard layouts. You can edit and save new or unknown keyboard layouts, as the basic course was designed to not depend on specific ones. Also, there are some charts about the learning process.
**** This page is not used for this project any longer. *** Please update your bookmarks and go to https://github.com/UUPharmacometrics/PsN
GNU Health - The Free Hospital and Health Information System
GNU Health is the award-winning Free Hospital and Health Information System (HIS). GNU Health is the Hospital Information System by the United Nations .- International Institute for Global Health. GNU Health was chosen by Richard Stallman to be included in the GNU System, from the Free Software Foundation. GNU Health is brought to you by GNU Solidario, an Non-Profit Organization (NGO) that delivers Health and Education with Free Software.
ICD10CM ICD10PCS NDC (Drug Codes USA) LOINC
Manage, Publish and Share Ontologies, Taxonomies, Thesauri, Glossaries
Web application for management formal representations of knowledge, thesauri, taxonomies and multilingual vocabularies / Aplicación para la gestión de representaciones formales del conocimiento, tesauros, taxonomías, vocabularios multilingües. For the latest version of code: https://github.com/tematres/TemaTres-Vocabulary-Server
OS X DICOM PACs server and an update to the Conquest server.
A DICOM PACs server for OSX. Just download and run the application. Easy to setup. Conquest is a well known DICOM PACs server in the windows world. In its heart is the dgate server. This is an Mac interface to that server. Several improvements have been made to the dgate server, JPEGLS for one, HL7 work list is another. The dgate code is compiled for Windows and use to replace the current date program in Conquest with the new added features.
Prediction of proteinfolding in 2D HP model
Even in the simplified two dimensional HP-model (hydrophob/polar) the prediction of proteinfolding is NP complete. We implement a brute force algorithm with serial and parallel execution to solve short inputs of HP sequences (0-1 bitstrings). Selbst im vereinfachten zweidimensionalen HP-Modell (hydrophob/polar) ist die Proteinfaltung bereits NP-vollständig. Hier implementieren wir einen brute-force Algorithmus zur Lösung kurzer Eingabesequenzen (0-1-Bitstrings) für die Proteinfaltung. Spende einen Cappuccino: Bitcoin: 1HqrdnfQgi9B4LW8UEvLAwh7X5gXPCoQ5B Litecoin: Lbo2jxD85ymyq5167r7yFVZkEr73F2h44B Paypal: paypal.me/GerritLeder Credits ====== Principle Investigator -------------------------- Gerrit Leder: protein folding algorithm design and testing, and initial implementation in Eiffel. Eiffel Consultant --------------------- Finnian Reilly: Eiffel code optimization and parallel processing adaptation. www.hex11software.com finnian at eiffel hyphen loop dot com
UMLS::Query is an umbrella for projects that create measures of semantic similarity for the biomedical domain. Our current project is UMLS-Interface and UMLS-Similarity. Our JBI-2007 article was based on Semantic-Similarity and Snomed-Interface.
Emacs editing mode for X12 files
Emacs editing mode for X12 files and messages. Defines X12-specific font-locking and text navigation.
This is a very simple OpenGL visualization library with a 3D and 4D volume renderer. It can easily be reused in other projects (e.g. with medical volumes). It is just perfect for learning or great if you like to hack your own code.
Framework for text mining, data integration and data analysis. Keywords: ontology and graph alignment, relation mining, warehouse, semantic database integration, bioinformatics, systems biology, microarray, Java.
CvMob is an Open Source tool to automatic visual analysis of human movement. The software calculates the optical flow to generate data about trajectory, velocity and acceleration using low-quality videos. For more informations, please visit our website: http://www.cvmob.ufba.br/
R packages for PK/PD modeling, BE/BA, drug stability, ivivc, etc.
These R packages are developed for data analysis of PK/PD modeling, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM). They include bear, ivivc, PKfit, stab and tdm.
Projeny (Probablistic Networks Generator in Java) is a graphical (Java SWT) front-end to BNT (Bayes Net Toolbox for Matlab). Projeny requires BNT, JMatLink and a Matlab back-end. There is no installable release package, but source code is available on SVN - please check out from SVN to use Projeny. Projeny was started with BNJ as the base.
MCX - GPU-accelerated 3D Photon Transport Simulator
MCX is a Monte Carlo simulation software for static or time-resolved photon transport in 3D media. It uses GPU-based massively parallel computing techniques and is extremely fast compared to the traditional single-threaded CPU-based simulations.
Hybrid IT Monitoring and Analytics Software - SaaS, Virtual, Physical
Zenoss is the global leader in hybrid IT monitoring and analytics software, providing complete visibility for cloud, virtual and physical IT environments for more than 40,000 global organizations. Zenoss customers gain IT performance and risk insights into their unique IT ecosystems through real-time analytics that adapt to the ever-evolving data center and cloud, enabling them to eliminate disruptions and accelerate business. The power of Zenoss Core begins with its in-depth IT inventory and configuration database. Zenoss creates this database by discovering managed resources -- networks, servers, storage, and other devices -- in your IT environment. Once Zenoss Core discovers the IT infrastructure, it automatically begins monitoring the performance of each device and provides event and fault management capabilities. Zenoss offers Open Source Core, Enterprise and SaaS solutions as well as an open API and SDK to easily extend your IT monitoring via Zenoss ZenPacks.
3DBrainExplorer is a lightweight OpenGL-based 3D renderer for scientific visualization of volumetric data (NIfTI) featuring real-time image manipulation, AAL brain labels (Tzourio-Mazoyer et al., 2002), SPM5 statistical images and stereo display.
Treating your secrets like US Governments Top Secrets
Multi-platform API for Image Processing systems in Life Sciences
WrapImaJ purposes to be a multi-platform wrapper for different Image Processing systems for: - using the Java programming language. The purpose of WrapImaJ is not to combine an exhaustive collection of all functionalities of different imaging system, but to offer a simple, concise Application Programming Interface (API) - allowing to develop imaging software, the source code of which is independent from the underlying imaging system on which it relies. In it's current form, it only wraps basic functionalities of ImageJ. The developers of WrapImaJ intend the library to support compatibilty with the main imaging systems available in the Java language and broadly used in the field of life sciences.
Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes.