Caxpy is an easy to use data visualization tool that helps you unde
Creating beautiful dashboards and thousands of reports that can be embedded into your application can be easily done with Caxpy. Its a very lightweight application which can be used to create reports from just plain SQL queries.
HiPS tool features to design and analyze hierarchical Petri nets
HiPS tool is developed at the Department of Computer Science and Engineering, Shinshu University, which is a tool design and analysis of Petri nets, developed using Microsoft Visual C # and C++. HiPS tool has a way of intuitive GUI which enable hierarchical and/or timed-net design. HiPS tool has also functions of static/dynamic analysis : T-invariant detection, Reachability path analysis, deadlock state detection, and k-boundedness analysis. In addition, it is possible to perform a random walk simulation with each firing steps.
SQL Data Workshop is a Rich SQL Front End System
SQL Data Workshop is a free open source SQL front end that allows to you create and display complex sql queries easily. It supports most of commercial DBMS’s like Microsoft SQL Server, MySQL, Hyper SQL, Derby and Postgre SQL. Support for more DBMS’s will be incorporated in future versions and updates. SQL Data Workshop´s User Graphical Interface allows to you design complex queries involving multiple tables in an agile, single and friendly environment. Thanks to Anudeep and PAscal of SQLeo project (http://sourceforge.net/projects/sqleo/) in wich the visual query builder of SQL Data Workshop is based. Now, SQL Data Workshop is based on Java 8 in order to allow us to migrate to JavaFX in future versions! Enjoy it!
Onix ERP/CRM is an easy to use web application to manage your business (contacts, invoices, orders, products, stocks, agenda, emailings, etc...) for small and large company. It's an opensource and free web application for developers and freelancers. You can install and use it as a standalone application, or online on a mutualized or dedicated server to use it from anywhere. -- Latest version : 0.2 alpha
This is a MATLAB toolbox to run a GA on any problem you want to model.
This is a toolbox to run a GA on any problem you want to model. You can use one of the sample problems as reference to model your own problem with a few simple functions. You can collaborate by defining new example problems or new functions for GA, such as scaling, selection or adaptation methods. In that case, you should then include your credits in the file, upload it to matlab central and contact the author. Suggestions are also welcome but naturally I won't be able to attend all of them.
Quantifies DNA, RNA or protein bands in agarose or acrylamid gels.
SpeedyQuant is a gel imaging/analysis software that automatically detects and quantifies gel bands (DNA, RNA, protein) in agarose or acrylamid gels. When calculating the relative strength of each band (% of most prominent band) it takes the background noise into account. This leads to accurate and comparable results. Several options can be used to tune the detection process. Here we provide the source code of the program (Perl script) that can be run on any OS with Perl installed (e.g. the freely available Strawberry Perl). A Win-64bit executable is available at: www.foreach-bioinformatics.de
Weather application for your every need based on Java
NEW Weather v4.5 released!! (EXE, JAR ) Featuring 4 different API's & millions of cities across the globe - powered by Yahoo Weather API, Openweather API, Forecast IO API & Wunderground API Weather ALERTS Auto-location - by Geolocation-IP address API Multiple weather location/feature input - City, Landmark, ZIP code , WOEID code WOEID Lookup - features all cities across the globe with similar Name/ZIP 5-Day weather forecasting system Precipitation forecast - Rain,Snow,Sleet,Hail Rain forecast - 36 - hour forecast starting from now; Provided by one of the most reliable rain forecast sources in the world - Weather Underground UV & Solar radiation - Real-time from Weather Underground MAPS - Includes local street webcam image, Long-range IR satellite image, Visible satellite image and Doppler radar(animated and non-animated for N.America) all in real-time + Google map
Test your Arduino/BlueTooth-based components.
BlueTermFX is a small application that allows you to test your Arduino/BlueTooth-based components. It is inpired in the Android BlueTerm application.
Encrypt Your Text documents with XOR encryption
This software provides an easy graphical way to encrypt your text documents from source code , text files ,scripts even jpeg files .It is a enhanced version of my earlier project https://sourceforge.net/p/xorencrypt which used win32 GUI . This is a demonstration of working of XOR encryption which was used by Germans in World War II (http://en.wikipedia.org/wiki/Lorenz_cipher) . Besides from XOR'ing the message with password after every encryption the key changes pseudorandomly. The password you provide is hashed ( SHA256 ) and saved into the encrypted file to check if the password provided is correct.This algorithm has limitations in general more the numbers of relative characters in the password to plaintext more secure will be the encryption. XOR encrypt has a 3.5 of 5 editors rating from softpedia http://www.softpedia.com/get/Security/Encrypting/XOR-Encrypt.shtml
Braille Text Editor
I have created this text editor to help blind people to write whatever they want in text using Braille. As a teacher i decided that it would be good to learn Braille. When i started i came up with this idea. Firstly this was only a text editor but now i have impove it so it has triple use : 1. It is a text editor for Blind people 2. It helps blind children to familiarize themselves with computer 3. It has a grafical interface so this can be used by anyone who know Braille (and not only them cause the software comes with a reference to letters, symbols and numbers in Braille). It is a really good for practice.
Integrated Islamic Library
Maktabah Al-Miftah is a Linux digital book reader for Shamela eBook (.bok), Thwab eBook (.th) and its own eBook (.mfth). Version 3.3 is not compatible with Ubuntu 15.10 and up. Now, version 3.4 runs on Lubuntu 17.04. Its installation is on the following Web Site: Maktabah Al-Miftah adalah pembaca kitab digital Linux untuk eBook Syamilah (.bok), eBook Thwab (.th), dan eBooknya sendiri (.mfth). Versi 3.3 tidak kompatibel dengan Ubuntu 15.10 ke atas. Sekarang, versi 3.4 dapat berjalan di Lubuntu 17.04. Cara pemasangannya ada di Situs Web berikut:
si-Fi is a Software for RNAi (RNA interference) off-target prediction.
si-Fi is a Software for RNAi (RNA interference) off-target prediction The software is designed for checking long-double stranded RNAi constructs for target specificity and silencing efficiency. It can be used also to select sequence regions suitable for designing RNAi constructs. The program provides clear tabular and graphical outputs.
Control Voltcraft Power Supply and Victor 86C Multimeter
ANNOUNCEMENT Project has moved to a proprietary website! http://www.instruman.it Updated source code available at https://instruman.codeplex.com/ This is an interface used to program and control Voltcraft DPPS-32-15 Power Supply, and to log data from Victor 86C Multimeter. It's an all-in-one solution to use the two instruments at the same time for Scientific, Research and Study purposes. Features avaible are the following: -Victor 86C USB HID connection protocol -86C data reading and logging -COM port selection -Continuous reading of Voltage and Current -Continuous logging of Voltage and Current in a Chart with the option to export data to csv file -Possibility to set logging rate from 50 ms -Turn ON and OFF instrument -Set Voltage and Current -Set a custom voltage loop to play and reiterate -Reiteration possible in three ways: for a fixed time, for a fixed number of cycles and until the STOP button is pressed
Spectroradiometer control for shipborne reflectance measurements
Spectroradiometer control for autonomous reflectance measurements from moving vessels. The software incorporates GPS signal parsing, control of the sensor platform viewing angle (stepper motor control), sensor triggering and data recording. Continue to the download section for the latest release information Rrs data processing code (the 'fingerprint technique') is also available - but moved to my github page: https://github.com/StefanSimis -------- Oct 2014: a beta version is available (20141006) Sep 2014 news: The latest version is 20140723, addressing some bugs. See the change log. Enjoy! Two Rflex units collected over 30,000 validated Rrs spectra on the Baltic Sea this year! See http://www.ferryscope.org for dissemination of these results in the coming years. ------ Licence: http://creativecommons.org/licenses/by-nc-sa/3.0/
Bioinformatics related demos and tutorials using the R programming lan
Bioinformatics related demos and tutorials using the R programming language for large biological data. Licence: Creative Commons Attribution-NonCommercial 4.0 International License
Tool for conducting systematic literature reviews and studies
ReLiS stands for "Revue Littéraire Systématique" which is French for "Systematic Literature Review". When a researcher wants to address a research problem, he starts by looking at what already exists in the scientific literature (published papers) on the topic. ReLiS is a tool that helps him considerably reduce the effort to analyze the corpus of papers, typically varying between hunderds and thousands depending on the research topic. ReLiS allows the user to follow a systematic process and automate the classification of papers as much as possible during the literature study.
Physically correct simulation of 2D-waves
UPDATED VERSION ON GITHUB! http://github.com/AtiX/wavesim This is a physically correct simulation of waves on a surface, for example water-waves. It can also be used to simulate Microwaves, and has features like the support for different refraction indices, different wave sources and custom borders. Therefore, experiments like the double-slit-experiment can be easily simulated.
C.H.A.O.S. is a Linux distro made for clusters.
C.H.A.O.S. Linux is a distribution based on the Arch Linux operating system. It's a cluster oriented OS that does not providea graphical environment. Being based on standard Arch releases, this distro supports both i686 and x86_64 architectures. C.H.A.O.S. was created with a fixed main purpose: let admins get their cluster running in almost no time; despite having to manually install it on every node, the built-in textual installer will automate most of the process. More informations at official website, or extensive review at: http://linux.softpedia.com/get/Linux-Distributions/C-H-A-O-S-Linux-103444.shtml
Consensus Variant Effect Classification
The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the modules. SVMlight, SIFT, Polyphen2, SNPs&GO and Mutation Assessor are the property of their respective authors and institutions and are not distributed in this package.
Handy tools to process/analyze next generation sequencing (NGS) data
The NGS TOOLBOX is a collection of simple open source Perl scripts that perform basic analyses and processing steps using next generation sequencing (NGS) datasets. Each tool is designed to ensure convenient and intuitive usage. Installation and usage does not require any bioinformatics skills. All scripts work out-of-the-box. Advanced users may use the command line based Perl scripts to build automated sequence analyses/processing pipelines. If you use the NGS TOOLBOX you for publication purposes you can cite the following methods paper: Rosenkranz D, Han CT, Roovers EF, Zischler H, Ketting RF. Piwi proteins and piRNAs in mammalian oocytes and early embryos: From sample to sequence. Genomics Data 2015 5:309-313.
Attempt to create software calculating any prime number with it's nr.
ScreenSifter is a unique tool for RNAi Screen analysis and management
ScreenSifter can help you in managing all your RNAi screens related projects in organized fashion. ScreenSifter, to perform the sequential, user friendly, guided, and advanced statistical analyses of RNAi screening results. User can upload their raw signal intensities and will avail complete quality control of screen, hit selection, plotting of hit genes with gene ontology, comparing of replicates or comparing of channels. In addition, ScreenSifter has visualization tools to plot specific genes or gene groups in the screen data. ScreenSifter also provides Gene Set Enrichment Analysis (GSEA), protein-protein interaction directly on the plot. Publication: ScreenSifter: analysis and visualization of RNAi screening data Pankaj Kumar, Germaine Goh, Sarawut Wongphayak, Dimitri Moreau and Frédéric Bard BMC Bioinformatics. 2013 Oct 3;14(1):290. http://www.biomedcentral.com/1471-2105/14/290/abstract
Software to make fast synthesis of spherical harmonics global models
This software computes synthesis of spherical harmonics models on sparse coordinates or grids (provided in a geodetic or geocentric reference system). It exploits basic parallelism using openmp directives. A solution with MPI has not be taken into account since it cannot be so easily manageble by final users.
Prediction of MHC class I- and MHC class II-restricted T-cell epitopes. Prediction of proteasomal/immunoproteasomal processing of antigens. Prediction of peptide-TAP binding.
Software developed for the analysis of Neutron Reflectivity data.