A barcode encoding library supporting over 50 symbologies including Code 128, Data Matrix, USPS OneCode, EAN-128, UPC/EAN, ITF, QR Code, Code 16k, PDF417, MicroPDF417, LOGMARS, Maxicode, GS1 DataBar, Aztec, Composite Symbols and more. After some time of inactivity this project is now back to life! This is the one and original ZINT barcode generator, the reference in open source barcodes. ZINT is licensed under the terms of the GPL v3. Only the contained backend (aka ZINT shared library) is licensed under BSD 3.
3270 Terminal Emulator
x3270 is a suite of 3270 terminal emulation tools. x3270 is an interactive X11 client, c3270 is curses-based interactive client, and s3270 and tcl3270 are scripting tools for writing screen-scraping applications. wc3270 is the Windows console client and ws3270 is the Windows screen-scraping tool. Includes IND$FILE support, DBCS, and more.
Cross-platform DICOM implementation
Grassroots DiCoM is a C++ library for DICOM medical files. It is accessible from Python, C#, Java and PHP. It supports RAW, JPEG, JPEG 2000, JPEG-LS, RLE and deflated transfer syntax. It comes with a super fast scanner implementation to quickly scan hundreds of DICOM files. It supports SCU network operations (C-ECHO, C-FIND, C-STORE, C-MOVE). PS 3.3 & 3.6 are distributed as XML files. It also provides PS 3.15 certificates and password based mecanism to anonymize and de-identify DICOM datasets.
professional CRM and groupware service, ready for the cloud
NEW VERSION 4.1.0: openCRX is a professional CRM service (customer relationship management) deployable to all major platforms. openCRX is multi-entity enabled, scalable, a real enterprise-class CRM-solution that runs on Apache TomEE.
Open Source PKI solutions
The OpenCA PKI Development Project is a collaborative effort to develop a robust, full-featured and Open Source out-of-the-box Certification Authority implementing the most used protocols with full-strength cryptography world-wide.
DICOM Anonymizer replaces the patient names in all the DICOM files in a folder (and sub-folders) with other strings you assigned. Works as a batch and works fast. Supports number index. Anonymizing is required for medical image processing.
Virtual Screening software for Computational Drug Discovery
PyRx is a Virtual Screening software for Computational Drug Discovery that can be used to screen libraries of compounds against potential drug targets. PyRx enables Medicinal Chemists to run Virtual Screening from any platform and helps users in every step of this process - from data preparation to job submission and analysis of the results. While it is true that there is no magic button in the drug discovery process, PyRx includes docking wizard with easy-to-use user interface which makes it a valuable tool for Computer-Aided Drug Design. PyRx also includes chemical spreadsheet-like functionality and powerful visualization engine that are essential for Rational Drug Design. Please visits PyRx home page to learn more about PyRx and watch videos on how to use it.
Avalon Toolkit for SMILES-based cheminformatics services
The Avalon Cheminformatics Toolkit contains tools to render and canonicalize SMILES and manipulate MOL file and related formats as well as structure fingerprinting.
This project, developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation.
This project, developed at UCL London, provides code for tomographic reconstruction. NiftyRec is written in C and has Python and Matlab extensions. Computationally intensive functions have a GPU accelerated version based on CUDA.
ANSI Standard MUMPS
Implementation of ANSI Standard MUMPS 1995 and ISO/IEC 11756 for FreeBSD, OSX and linux. Also on the Raspberry Pi (ARM) under debian and Windows under cygwin. This is the post-relational database.
This software aims to provide a free, open source Java based Clinic/Hospital Management Software. Clinics and hospitals in resource constrained countries can find this software as an alternative to other expensive commercial software.
Gfarm file system is a network shared file system that supports scalable I/O performance in distributed environment. It can federate local disks of network-connected PCs and compute nodes in several clusters.
Parallel Iterative Deconvolution is a multithreaded ImageJ plugin for iterative image deblurring.
Generalized Radiation Observation Kit. Java toolkit (based on David Clunie's PixelMed DICOM toolkit) for extracting CT radiation dose information from DICOM image archives.
This project is the implementation of The Virtual Collaborative Environment (VCE) which supports clinical applications of 3D modeling in medicine. The system is based on three layer client-server architecture.
SIVIC is an open-source, standards-based software framework and application suite for processing and visualization of DICOM MR Spectroscopy data. Through the use of DICOM, SIVIC aims to facilitate the application of MRS in medical imaging studies.
An automatic tool for binning metagenomics sequences
MaxBin is a software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users could understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic sequences and the reads coverage information or sequencing reads. For users' convenience MaxBin will report genome-related statistics, including estimated completeness, GC content and genome size in the binning summary page. Users could use MEGAN or similar software on MaxBin bins to find out the taxonomy of each bin after the binning process is finished. The most current version is 2.2.4. MaxBin was published on Microbiome journal (2:26)! Please cite the Microbiome paper if you use MaxBin in your work. More information can be found at the official MaxBin website: http://downloads.jbei.org/data/MaxBin.html to
V3D-Viewer is a Dicom and "Philips V3D 3DRA" Medical Volume Viewer based on .Net and the VTK library. With marching cubes, 3d planes and (3D texture) volume rendering, including histogram transparency and intensity curve selection tool.
Library to support quantitative analysis of radiotherapy data
RTToolbox is a software library, developed at the DKFZ to support quantitative analysis of treatment outcome for radiotherapy. The RTToolbox was designed following object-oriented design principles and was implemented in the language C++. It supports the import of radiotherapy data (e.g. dose distributions and structure sets) from DICOM-RT format and other standard image processing formats by using a bridge to ITK. The RTToolbox supports the full range of radiotherapy evaluation. Tools such as DVH calculation, arithmetic operations on dose distributions and structure relationship analysis are provided as a basis for further calculations. Dose comparison indices such as Conformity Index (CI), Homogeneity Index (HI) and Conformation Number (CN), and biological models including TCP, NTCP, EUD and BED are determined from dose distributions and DVHs. The RTToolbox can be easily extended to support other data format, comparison indices and models.
Structure parameter inference approach for endocrine feedback control
SPINA is software for determining constant structure-parameters of endocrine feedback control systems from hormone levels obtained in vivo. The first version of this cybernetic approach allows for evualuating the functional status of the thyroid gland, i.e. thyroid's secretory capacity (GT or SPINA-GT) and sum activity of peripheral deiodinases (GD or SPINA-GD).
QuickDicom is an easy to use dicom medical imaging package for Mac OSX, providing QuickLook, Spotlight, Quartz Composer, Window/Level and a dicom file analyzer. Also included is the iiDicom Framework for image/dictionary usage in Objective C and Python.
Portable command line utility for encoding and recording audio signals (chirps) to set the speed, incline, and resistance functions of iFit technology equipped exercise machines. Writes generated settings signals to music file format.
Pyx12 is a python based ANSI X.12 to XML EDI translator and validator
Development has been moved to github.
ECMOjo is a simulator and trainer for extracorporeal membrane oxygenation (ECMO). ECMOjo consists of a graphical user interface to allow interaction and train ECMO practitioners.