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The Gene Expression Knowledge Base (GeXKB) encompasses three application ontologies: the Gene Expression Ontology (GeXO), the Regulation of Gene Expression Ontology (ReXO), and the Regulation of Transcription Ontology (ReTO). These three ontologies integrate increasingly more specific information relevant to gene expression from a variety of sources - GO, UniProt, IntAct, GOA, NCBI taxonomy and KEGG
international glyph-based auxlang
Association de l'asie pacifique et de l'asie mineur : Mention projet \apac (SF.NET) Chancellerie fédérale Palais fédéral ouest 3003 Berne2 weekly downloads
MUMmer is a modular system for the rapid whole genome alignment of finished or draft sequence. This package provides an efficient suffix tree library, seed-and-extend alignment, SNP detection, repeat detection, and visualization tools.217 weekly downloads
The Introspector enables the programming tools that deal with source code such as the compiler to communicate in a standard and neutral manner reducing the accidental cost of programming. http://github.com/h4ck3rm1k3/
PerlMol is a collection of Perl modules for chemoinformatics and computational chemistry with the philosophy that "simple things should be simple". It should be possible to write one-liners that use this toolkit to do meaningful "molecular munging".
Discovering Candidate Services in XML Process Definition Language (XPDL).
Handlebar is a web based system designed to store data on individual barcoded samples in, for example, a laboratory environment
TheoChemPy is a python library providing common functionalities for Theoretical and Computational chemists.
SPECTRa is a suite of tools that make it easier to get chemistry data into Open Data repositories.
This project is a java web application developer toolbox. It is among other, a simple and powerful framework which does not require dealing with XML files. It also provides a lot of other features, such as a DB abstraction layer, a nice javadoc doclet, a
This program will allow herbavore-like life forms to evolve on a grid. The grid will grow food, and these organisms will evolve to eat the food on the ground, reproduce and compete with other organisms in the same environment.
This project tries to make Spanish Wikipedia a useful resource for the language research community.
This project is result of a challenge "creating a fractals generator by using only C++ and Qt", AiFractals is based on Qt Script and you can enjoy by generating your custom fractals =) by your own algorithms (Qt Script)
The project will provide a Cocoa framework to interface OpenGL in a more OO-fashioned style. It is not meant to be the fastest code possible, nor to leverage all the power of OpenGL, but to give developers a easy way to start working in 3D1 weekly downloads
The Princeton Protein Orthology Database (P-POD), developed by the Genome Databases Group at Princeton, computes and displays families of orthologs between multiple organisms.
Evolvica is a Java framework for development of and experimentation with evolutionary algorithms. It is based on the Eclipse platform and includes a visual editor for algorithms and genetic operators.
UMMF is an open-source implementation of UML-compatible meta-meta-model, for the purposes of reifying meta-model implementations and to provide a platform for building flexible model and meta-model transformation tools.
PySOS, a python-based implementation of the OGC SOS standard. PySOS is a lightweight set of scripts that work in conjunction with a web server to serve data from a relational database.
An nmap output parser for scan data using PERL. Nmap Parser is a PERL module that makes developing security and audit tools using nmap and PERL easier. nmap is one of the best security scanners.
>>> MIA has been moved to GitHub! <<< Please use the new Location: https://github.com/udo-stenzel/mapping-iterative-assembler =========================================================
Palabra is an extensible dictionary written in Perl using a MySQL database for linguistic information. It is designed to be used with any number of languages with links to translations. Check out the source code using CVS or browse the CVS Repository.
Time Travel is possible1 weekly downloads
An ontology comprising of all the rat strains arranged in the OBO format.
IDEA (Interactive Display for Evolutionary Analyses) augments PAML with a graphical interface, phylogeny reconstruction using PhyML or PHYLIP, convenient and efficient parallel processing and visualizations.