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The Princeton Protein Orthology Database (P-POD), developed by the Genome Databases Group at Princeton, computes and displays families of orthologs between multiple organisms.
Evolvica is a Java framework for development of and experimentation with evolutionary algorithms. It is based on the Eclipse platform and includes a visual editor for algorithms and genetic operators.
UMMF is an open-source implementation of UML-compatible meta-meta-model, for the purposes of reifying meta-model implementations and to provide a platform for building flexible model and meta-model transformation tools.1 weekly downloads
PySOS, a python-based implementation of the OGC SOS standard. PySOS is a lightweight set of scripts that work in conjunction with a web server to serve data from a relational database.
An nmap output parser for scan data using PERL. Nmap Parser is a PERL module that makes developing security and audit tools using nmap and PERL easier. nmap is one of the best security scanners.1 weekly downloads
A C++ library for Bayesian computation, including a collection of more generally-applicable utilities.1 weekly downloads
This library provides an Opensource ATPG API to build your programs on. The library implements a lot of template c++ classes and functions that provide Combitional/Sequential logic simulation, and fault simulation functionality(semi-PROOFS).12 weekly downloads
>>> MIA has been moved to GitHub! <<< Please use the new Location: https://github.com/udo-stenzel/mapping-iterative-assembler =========================================================3 weekly downloads
Palabra is an extensible dictionary written in Perl using a MySQL database for linguistic information. It is designed to be used with any number of languages with links to translations. Check out the source code using CVS or browse the CVS Repository.
Ab initio gene finder. Formerly known as TIGRscan.1 weekly downloads
Time Travel is possible1 weekly downloads
CryptoPy is a pure python implmentation of cryptographic algorithms and applications. The algorithms are developed for readability more than speed. The collection now includes IEEE 802.11i specific algorithms that generated the test vectors for 802.11i.6 weekly downloads
An ontology comprising of all the rat strains arranged in the OBO format.
Designed to help visualize how evolution works, this program will show the camouflage evolution of little polygons to match their background. Polygons will reproduce in slight variations of color and size while the user clicks to "kill" them.1 weekly downloads
A cross-platform interface for the *.mfj file format.7 weekly downloads
IDEA (Interactive Display for Evolutionary Analyses) augments PAML with a graphical interface, phylogeny reconstruction using PhyML or PHYLIP, convenient and efficient parallel processing and visualizations.1 weekly downloads
Visai Neri is an attempt to syntactically parse Natural Languages in general and Tamil in particular. To this end, we have developed an application using JavaCC to parse Venpa poetry after writing the grammar in BNF. Vision: complete Tamil grammar in
ReqSimile is an application that supports and facilitates linking and merging between requirements specifications written in plain text. The underlying similarity calculations are based on the latest research in the field.1 weekly downloads
The Pathway Ontology is a structured controlled vocabulary for biological pathways. Its hierarchical structure offers a ‘view’ of the connections between individual pathways, of the possible link between altered pathways and diseases.
MyCAS has now become closed source. Unfortunately, I cannot delete this page, so will keep a redirect to the new site until I can resolve it. MyCAS is now completely a GUI.
This is the software that supports the metagenomics analysis for Dr. Shannon Williamson's Marine Virioplankton project.
TM4 is a suite of applications for managing and analyzing microarray data. TM4 provides data storage and tracking, image analysis, normalization, data filtering, clustering and statistical analysis capabilities. Includes MADAM, Spotfinder, MIDAS, and MeV.
Type the world's signed languages in the visual symbols of SignWriting(R) with the help of the application "SignWriter(R) Tiger".4 weekly downloads
Genomic assembly manipulation toolkit.2 weekly downloads
SPM surfrend toolbox is a suite of scripts that add surface-based rendering capabilities to SPM99/2 generated statistical maps.18 weekly downloads