YAPCoM - Yet Another Perl Conference Manager.
A Interactive Network VideoGame
Array2Net is a tool for visualizing gene co-expression network of expression profiling data.
BlueJam is a Java-based algorithmic music composer that uses evolutionary techniques and heuristics. Originally intended to evolve solos on the blues scale. BlueJam interfaces with Pure-Data to give real-time output.
Designed to help visualize how evolution works, this program will show the camouflage evolution of little polygons to match their background. Polygons will reproduce in slight variations of color and size while the user clicks to "kill" them.
Discovering Candidate Services in XML Process Definition Language (XPDL).
dci is an RPN scientific calculator for console users. It is an improved /usr/bin/dc, though not 100% compatible. dci is designed for quick handling of arithmetic, trigonometry, logarithms, and complex values.
literate documentation system for xsd, relax-ng, xslt and ant
Ergatis is a web-based utility used to create, run, and monitor reusable computational analysis pipelines, utilizing the Workflow engine. It contains pre-built components for common bioinformatics analysis tasks.
froi (FS-FAST ROI) is a suite of Perl scripts and modules to provide easy slice-, volume-, and surface-based ROI analysis of functional MRI (fMRI) data analyzed by FS-FAST and Freesurfer (http://surfer.nmr.mgh.harvard.edu).
gRSShopper is an application that allows you to define your own community of RSS feeds, aggregates content from those feeds and organizes it, and helps you integrate that content into your own posts, articles and other content.
genome-map is genome-viewer in model organism. It is focused on 'chromosomal change/position information' of features.
This program will allow herbavore-like life forms to evolve on a grid. The grid will grow food, and these organisms will evolve to eat the food on the ground, reproduce and compete with other organisms in the same environment.
The iStuff framework simplifies prototyping post-desktop interactions. This project is designed to serve as a repository for iStuff proxies that enable components to communicate via the Event Heap infrastructure.
a C++ template framework for run-time dynamic type instantiation
This is the software that supports the metagenomics analysis for Dr. Shannon Williamson's Marine Virioplankton project.
OpenSourceDCC is an online repository for open source data coordinating center software derived from completed and ongoing NIH/NHLBI funded projects at the Channing Lab at Brigham and Women's Hospital/Harvard Medical School.
Palabra is an extensible dictionary written in Perl using a MySQL database for linguistic information. It is designed to be used with any number of languages with links to translations. Check out the source code using CVS or browse the CVS Repository.
As an NIAID Bioinformatics Resource Center (BRC) Pathema contains in depth curatorial analysis of six target organisms from the list of NIAID category A-C pathogens. Pathema also offers single-genome and comparative multi-genome analyses as well as displ
Pathsim is an agent-based simulation of Epstein-Barr virus infection. This is academic software used to investigate the dynamics of host/pathogen interaction. It was developed under the auspices of the Thorley-Lawson lab at Tufts Medical School.
From project management to general decision making, SWOT is a key tool. Lack of packages (specially Open Source) driven me to create a multiplatform tool, using available, free resources.
a library which i hope to write to compute high precision aerodynamic and electrodynamic equations
pprint - cross referencing postscript pretty-printer for C/C++/Verilog source code
!!! PTEROS DEVELOPMENT MOVED TO GITHUB !!! New project page: https://github.com/yesint/pteros New documentation page: https://yesint.github.io/pteros/ Pteros is the C++ library for custom molecular modeling and simulations codes designed for researchers, not for C++ gurus. Provides facilities for PDB, XTC and TRR files IO, powerful selections, geometry transformations, RMSD fitting and alignment, etc.
Seqsee is a program that extends integer pattern sequences in a human like way.