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This is a version of XTandem software for MS/MS protein identification ported to Cell BE processor by Sony-Toshiba-IBM used in PS3. Based on original XTandem (Copyright by R. C. Beavis) version 2008.02.01.
This is the public repository for the software being developed by the Center for Cancer Computational Biology at the Dana-Farber Cancer Institute.
ChkChak - Killbird, SEO dream, Twitter nightmare.
Coati is a web development framework and API for genome databases that supports multiple database vendors and database schemas.
Our mission is to organize educational materials that have teacher information, exercises, and open source software linked on site. We aim at verfied, validated, and accredited materials, whether software or hardcopy.
Evolvica is a Java framework for development of and experimentation with evolutionary algorithms. It is based on the Eclipse platform and includes a visual editor for algorithms and genetic operators.
Freeways is a FOSS dedicated club The club maintains: Novice projects: a Sudoku game, a snake game Guides: Using opensource software Advanced projects: GEM: a framework to make game development easier. Modelsim clone: an opensource alternative to m
The Gene Expression Knowledge Base (GeXKB) encompasses three application ontologies: the Gene Expression Ontology (GeXO), the Regulation of Gene Expression Ontology (ReXO), and the Regulation of Transcription Ontology (ReTO). These three ontologies integrate increasingly more specific information relevant to gene expression from a variety of sources - GO, UniProt, IntAct, GOA, NCBI taxonomy and KEGG
We demonstrate the development of simple applications which solve partial differential equations based on the facilities of the GTL and the GFL. Such as the Laplace or Poisson equation, parabolic equations and hyperbolic equations.
Harmonize + gene = Harmogene Efficiently create sets of genome annotations ("consensus annotations") from one or more source genomes using simple rules and and apply those annotations to one or more target genomes. See the Trac page for more info.
MathLib.NET is to be a open source library for the Microsoft .NET Framework and seeks to provide statistical functions, approximations, along routines that will extend the existing mathematical functions available.
international glyph-based auxlang
The mtc project provides cache misses analysis and prediction tools for cache-aware scheduling. (moved to google code)
Mirror is a full featured object oriented programming language. In Mirror all programmatic entities are first class objects, actions are performed by sending messages to objects ala Smalltalk, and binding is dynamic and performed at runtime.
MyCAS has now become closed source. Unfortunately, I cannot delete this page, so will keep a redirect to the new site until I can resolve it. MyCAS is now completely a GUI.
This project is designed to be able to take standard NMEA data available from most boats and broadcast APRS WX reports. Other telemetry like battery voltage, tank levels, etc, as well as data logging will be supported.
PARPs database is a web-based tool whose features include experiment annotation, protein database searching, protein sequence management.Statistical validation, , visualization, and converters from raw MS data open mzXML mzData format
A set of PERL scripts that form the basis for a (flexible) lab experiment controlling system. GPIB and RS232 device controlling are planned to be part of the base system and not part of the experiment programming. Research life should be easier this way.
The Pathway Ontology is a structured controlled vocabulary for biological pathways. Its hierarchical structure offers a ‘view’ of the connections between individual pathways, of the possible link between altered pathways and diseases.
This project contains the software for extracting bioinformatics data (sequences, features and annotations) from TIGR's legacy schemas as well as support for efficiently loading data into chado from BSML.
Python based binding for Data Acquisition from Data acquisition hardwares. with this one can access hardware just like c++ inportb() and outportb() and extra stuff..
PySOS, a python-based implementation of the OGC SOS standard. PySOS is a lightweight set of scripts that work in conjunction with a web server to serve data from a relational database.
The goal of RNAO is to create a common, dynamic, controlled vocabulary (the RO), pertaining to RNA function and based on RNA sequences, secondary and three-dimensional structures.
An information engineering multi-tool, useful for debugging, security work and other tinkering endeavors. With an open plugin architecture, it can be easily extended to provide hours of fun.