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The Multi-purpose Automated Genome Project Investigation Environment (MAGPIE, http://magpie.ucalgary.ca/), is a software package for the automated curation and presentation of DNA and protein sequences. Freely available under terms of Apache license v2.0
Dogwood is an ontology-aware Distributed Annotation System (DAS) server framework for the integration of biological, biomedical and clinical data.
The WISDOM project is a Grid based production environment used to deploy bio-informatics large scale applications.
Object storage is clearly the simplest, most flexible, and most scalable way to store tons of unstructured content. Scality’s Zenko.io enables developers and businesses to take advantage of this simplicity, for free. Whether you're programming in Go or Java, or whether you're using existing applications for personal or shared data management, Scality’s Zenko.io is a great starting point.Advertisement
PetriNetExec a library for embedding Petri Nets into Java applications
Massively Parallel Graph processing on GPUs -- now part of Blazegraph1 weekly downloads
Tools for partitioning and prioritizing fastq data
Lucene/Solr based search engine and workflow system
ManageEngine's Applications Manager is a comprehensive monitoring tool for business organizations across the world to ensure uninterrupted business operations and profitability. Globally, IT admins across 100+ countries trust Applications Manager's capability in tackling critical issues and ensuring maximum efficiency among business critical servers. It is easy to use and supports a wide range of servers. Download now for a 30 day free trial.Is your IT/network healthy & optimized for performance?Advertisement
multiple sequence alignment on CUDA-enabled GPUs.
java API for tabular reports and pivot tables3 weekly downloads
A P2P overlay construction toolkit, which supports routing algorithm researchers in addition to application developers. It provides multiple routing (DHT) algorithms such as Chord, Kademlia, Koorde, Pastry and Tapestry, and a distributed environment emu
SimGen is Simulated Genetics. It simulates a simple DNA for moving within simple bacteria eating plankton. As good for Simulation it has Object-Oriented Design and is Coded in Java. It is a Applet and Dektop-Application and can be extended.
2PI - Plataforma para desenvolvimento de aplicações para sistematização e unificação do processo de projeto de produtos industriais.
Mathml Document Manager for Web Servers
Mupisim is a simulator for distributed, mobile systems. Its primary purpose is the study of mobile processes (e.g. mobile agents) and their communication mechanisms. It may also be used to evaluate the efficiency of a given process migration scheme.
OpenXL provides a flexible, platform-independent SOA/Web Service middleware and workflow programming language (SLL). OpenXL supports the creation, provisioning and execution of Web Services as well as the integration of code written in BPEL, Java, etc.
Cyberinfrastructure Shell (CIShell) is an open source, community-driven framework/application for the integration and utilization of datasets, algorithms, tools, and computing resources. Algorithms can be integrated using most programming languages.
The BioSchemas project develops XML schemas for the exchange of biological data e.g. through SOAP-based web services. It is a collaborative and open project intended to increase the interoperability between bioinformatics applications.
Cloudbased voice solutions are common in enterprise networks and frustrating for operations teams to manage. Simplify VoIP monitoring by having a proactive analysis of on-prem, hybrid and UCaaS voice services. Try the ThousandEyes VoIP monitoring solution today, free.Advertisement
Natblaster is a technique to allow for peer connectivity through NATs. This project provides a sample implementation of some of the Natblaster techniques.
Unison is a database and web interface of integrated, precomputed proteomic predictions for rapid feature-based mining, sequence analysis, and hypothesis generation. Click "Home Page" for more information and to access the public access version.
The FXL Project Eclipse Plugin leverages the integration of DSLs, (meta-) modeling approaches, code generation and the development of software configuration tools (sw-component-configuration).1 weekly downloads
OJAX provides - a meta-search service with a highly dynamic AJAX based user interface. - an OAI-PMH harvester to harvest multiple repositories to a single Lucene index - an easy to use, highly discoverable user interface to searching that index.
pystats is a comprehensive Python module implementing algorithms for statistics and information theory, including probability distributions, descriptive statistics, analysis of variance, regression, and inference.
Dasty is a web client for visualizing protein sequence feature information using DAS, the Distributed Annotation System.
This project aims to build an open source "clicker" implementation. Clickers are used in many University lectures to allow students to send responses directly to a professor's computer.