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Models of COVID-19 outbreak trajectories and hospital demand
Models of COVID-19 outbreak trajectories and hospital demand. This tool is based on the SIR model (see about page for details) that simulates a COVID19 outbreak. The population is initially mostly susceptible (other than for initial cases). Individuals that recover from COVID19 are subsequently immune. Currently, the parameters of the model are not fit data but are simply defaults. These might fit better for some localities than others. In particular, the initial case counts are often only...
Comparative analysis of open source in silico fragmentation tools
We compared the performance of four publicly available in silico fragmentation tools that help in structure elucidation of metabolites (MetFrag, CFM-ID, MAGMa+ and MS-FINDER).
Using the output of these tools we developed a voting/consensus model which is combining, re-ordering and re-ranking the candidates file and increases the correct hit percentage.
We used 520 compounds from the 2016 CASMI challenge with 312 compounds for training and 208 compounds for validation purposes.