Search Results for "sam"

Python library to compile, build & package AWS Lambda functions for several runtimes & frameworks. AWS Lambda Builders also supports Custom workflow through a Makefile. Lambda Builders is the brains behind the sam build command from AWS SAM CLI. Lambda Builders is a Python library. It additionally exposes a JSON-RPC 2.0 interface to use in other languages. Build Actions could be implemented in any programming language. Preferably in the language that they are building. Some build actions simply execute a binary (like Golang) without writing a Go script. ...

Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877, available online at: http://dx.doi.org/10.1093/bioinformatics/bts054 Note that the library part of Hadoop-BAM is mainly for developers with experience in using Hadoop. ...