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Commons-SSH is a thin bridge between different Java SSH implementations libraries. It doesn't contain any crypto-related code and created to be used by projects who doesn't want to care about export control regulations (let client to decide)
JGGAPi is java implementation of Gadu-Gadu protocol. Gadu-Gadu is a IM system very popular in Poland based on proprietary protocol. The implementation is based on specification of Gadu-Gadu protocol gathered during implementation of EKG application.
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OSGI4AMI Ontology (http://www.booksonline.iospress.nl/Content/View.aspx?piid=13894) describes devices properties and behavior. Several implementations will be available. Universidad de Zaragoza Java Interfaces Reference Implementation and osgi bundle
Tullibee provides Java EE components that work with Interactive Brokers' financial-trading Java API (the IB API). Tullibee's current focus is a JCA 1.6 resource adapter built on top of a modified version of the IB API.
RedRoo implements a framework for defining and executing hierarchical state machines. As a Red Kangaroo jumps from place to place, RedRoo will transition your application from state to state feeding on the events you pass to it. So get jumping!
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The Zabbix trap (zabtrap) client library allows you to send traps to a zabbix trap item configured on a zabbix server from your Java applications. For a full JMX Zabbix bridge (zabbix agent), check out http://www.kjkoster.org/zapcat/
SimpleNet is a small Java network library that should aid in writing fast and lightweight network protocols without having to fuzzle around too much with protocol decisions. It mainly aides in message dispatching and abstraction.
LiNNS is not just a Neural Network Simulator, but a Neural Network System - a framework which covers the full lifecycle of a neural network, from design and research till usage in an external application.