Showing 14 open source projects for "informatics"

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  • 1
    com-hfg

    com-hfg

    java library for XML, HTML, or SVG generation + bioinformatics classes

    The com.hfg (hairyfatguy.com) library is a collection of utility classes that make it easy to construct XML, HTML, XHTML, or SVG in an object-oriented way from within your Java application or webapp. It also contains other IO utilities and bioinformatics classes for phylogenetic trees, taxonomy, and multi-chain proteins. Requires JDK1.8.
    Downloads: 1 This Week
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  • 2

    biOP

    biOP [bio~ObjectPascal/bio~Delphi] bioinformatics libraries

    Downloads: 0 This Week
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  • 3
    Jillion
    Java bio-informatics library to analyze and convert genomic sequence and assembly data. This library was created and used by the J. Craig Venter Institute (JCVI)
    Downloads: 1 This Week
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  • 4

    WrapImaJ

    Multi-platform API for Image Processing systems in Life Sciences

    WrapImaJ purposes to be a multi-platform wrapper for different Image Processing systems for: - using the Java programming language. The purpose of WrapImaJ is not to combine an exhaustive collection of all functionalities of different imaging system, but to offer a simple, concise Application Programming Interface (API) - allowing to develop imaging software, the source code of which is independent from the underlying imaging system on which it relies. In it's current form, it...
    Downloads: 0 This Week
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  • 5
    Systems Biology Simulation Core Library

    Systems Biology Simulation Core Library

    Accurate and efficient Java library that simulates biological models

    This project has been moved to https://github.com/draeger-lab/SBSCL.
    Downloads: 0 This Week
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  • 6
    Hadoop-BAM is a Java library for the manipulation of files in common bioinformatics formats using the Hadoop MapReduce framework with the Picard SAM JDK, and command line tools similar to SAMtools. The file formats currently supported are BAM, SAM, FASTQ, FASTA, QSEQ, BCF, and VCF. For a longer high-level description of Hadoop-BAM, refer to the article "Hadoop-BAM: directly manipulating next generation sequencing data in the cloud" in Bioinformatics Volume 28 Issue 6 pp. 876-877,...
    Downloads: 189 This Week
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  • 7

    jMDFLib

    This is a small Java library which reads MDF Files up to Version 3.00

    This Library for Java shall enable developers to use (at first read, maybe later writer) MDF Files, as described by the Format Specification MDF Format by Vector Informatics. The MDF file format is widely used in automotive engineering and other fields for the recording of measurement data. This Java library parses MDF files and enables different kind of read access. If this library is not helpful for a particular purpose it can at least be used to see how the parsing (and therefore how the file format itself) works.
    Downloads: 1 This Week
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  • 8
    CQRlib is an ANSI C implementation of a utility library for quaternion arithmetic and quaternion rotation math.
    Downloads: 0 This Week
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  • 9

    bioluminescence

    A java library for polymorphic genome assembly.

    Bioluminescence is a java library for facilitating de novo genome assembly in the context of reads sampled from a single highly-polymorphic diploid individual. Bioluminescence implements a novel algorithm which uses an artificial neural network to classify contigs in a genome assembly as haplotype-specific or not-haplotype-specific. It then uses this information to partition the original input read set into two subsets, each of which has been enriched for one of the haplotypes. Initial...
    Downloads: 0 This Week
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  • 10
    The Boolean Network Toolkit is an efficient and easy-to-use object-oriented C++ library which enables researchers to simulate ad carry out experiments (like attractor sampling and Derrida plot computation) on large boolean networks.
    Downloads: 0 This Week
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  • 11
    GeCo++ is a C++ class library developed to the purpose of making easier and faster the implementation of sequence analysis algorithms when genomic annotations and variations need to be considered.
    Downloads: 0 This Week
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  • 12
    Foad (EKG Processing)
    Foad is an open source software which receive an EKG Signal from scanner, WFDB database or heart sensors. Finding patient disease started by taking Fourier transform (FFT) from input signal and extract a single cycle. Based on some heuristic algorithm the most important feature like P , Q , R , S , T captured and feed to trained neural network. and so the final decision made by CNN library. As mentioned before this software also capable do some image processing on scanned paper to lower...
    Downloads: 0 This Week
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  • 13
    The aim of GUINNEA (Graphical User Interfaced Neural Network Architecture) is to develop a comfortable and high-featured neural net simulator which is highly configurable and flexible. It will support many neural nets and visualization features for those
    Downloads: 0 This Week
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  • 14
    Cluster Networks are a new style of neural simulation / neural network modeling, that models networks of neural populations ("clusters") that transform and transmit information using precisely-timed, graded bursts ("pulses" or "volleys") of firing.
    Downloads: 0 This Week
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