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Non-Coding RNA PROfiling from sRNA-seq15 weekly downloads
A pipeline to define allele-specific genomic features2 weekly downloads
ALEXA-Seq is a method for using massively parallel paired-end transcriptome sequencing for 'alternative expression analysis'.
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QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).
Pipeline and set of tools for SNP calling and classification
An End-to-End Analysis Pipeline for BS-seq
My personal utilities wrote for dealing with Science and Computational Chemistry Jobs.