Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in "Files" section) ############# GitHub : https://github.com/jbrayet/ncpro-seq
Calculate and compare files with 3 different file signature algorithms
AllCheckSumer is a handy tool for computer forensics and is helpful for investigators to search throughout a computer’s file system for a bad hash specified by the investigator. The tool will search throughout a location, specified by the investigator. It can be either an entire file system or a specific folder, and create a hash set with the following file signature algorithms: • MD5 (Message-Digest Algorithm v. 5) • SHA-1 (Secure Hash Algorithm v. 1) • CRC (Cyclic Redundancy Check)
Humdrum Toolkit for music research
Nanotools is a set of Unix style tools and libraries used for helping system's administrators to manage several servers with several operating systems (IBM/Aix, SUN/OS, GNU/Linux). Nanotools is oriented for running in a production environement.
Plait (pronounced "play") is a command-line jukebox and music player front-end. It understands brief queries that pick a single song, mix queries that combine works from multiple artists, and stream queries that find Shoutcast radio streams.
Cotool is a collection of routines and tutorials on complexity analysis of time series. Cotool aims to make accessible all the tools of complex system analysis available in the scientific literature to all researchers studying complex phenomena.