The world's leading open source portal
Liferay Portal is the world's leading enterprise open source portal framework, offering integrated Web publishing and content management, an enterprise service bus and service-oriented architecture, and compatibility with all major IT infrastructure.
Hybrid IT Monitoring and Analytics Software - SaaS, Virtual, Physical
Zenoss is the global leader in hybrid IT monitoring and analytics software, providing complete visibility for cloud, virtual and physical IT environments for more than 40,000 global organizations. Zenoss customers gain IT performance and risk insights into their unique IT ecosystems through real-time analytics that adapt to the ever-evolving data center and cloud, enabling them to eliminate disruptions and accelerate business. The power of Zenoss Core begins with its in-depth IT inventory and configuration database. Zenoss creates this database by discovering managed resources -- networks, servers, storage, and other devices -- in your IT environment. Once Zenoss Core discovers the IT infrastructure, it automatically begins monitoring the performance of each device and provides event and fault management capabilities. Zenoss offers Open Source Core, Enterprise and SaaS solutions as well as an open API and SDK to easily extend your IT monitoring via Zenoss ZenPacks.
BioImageXD - free open source software for analysis, processing and 3D rendering of multi dimensional, multi data channel, time series image data from microscopy and other sources.
Virtual Screening software for Computational Drug Discovery
PyRx is a Virtual Screening software for Computational Drug Discovery that can be used to screen libraries of compounds against potential drug targets. PyRx enables Medicinal Chemists to run Virtual Screening from any platform and helps users in every step of this process - from data preparation to job submission and analysis of the results. While it is true that there is no magic button in the drug discovery process, PyRx includes docking wizard with easy-to-use user interface which makes it a valuable tool for Computer-Aided Drug Design. PyRx also includes chemical spreadsheet-like functionality and powerful visualization engine that are essential for Rational Drug Design. Please visits PyRx home page to learn more about PyRx and watch videos on how to use it.
Bots is a complete translator for edi: edifact, x12, xml, tradacoms
Bots is a complete translator for edi (Electronic Data Interchange). EDI data formats eg: edifact, x12, tradacoms, xml. Mail: http://groups.google.com/group/botsmail Web-site: http://bots.sourceforge.net Wiki: http://bots.readthedocs.io Develop: https://github.com/eppye-bots/bots
Add security to your desktop by automatically locking and unlocking the screen when you and your phone leave/enter the desk. Think of a proximity detector for your mobile phone via bluetooth.
Febrl (Freely Extensible Biomedical Record Linkage) does data standardisation (segmentation and cleaning) and probabilistic record linkage ("fuzzy" matching) of one or more files or data sources which do not share a unique record key or identifier.
socketReader sends and receives messages via TCP/IP socket and file system. M:N routing is supported. Many communication paths can be configured in parallel. Both, Linux/Unix and Windows, are supported.
Stochastic simulator for signaling pathways occuring in biological cells. Handles reaction-diffusion processes in 3D tetrahedral meshes.
A general-purpose individual-based forward-time population genetics simulation environment
Libraries and command line tools for medical image processing.
This software provides libraries and command line tools for the processing and analysis of gray scale medical images.
Secure mail + Tor gateway
Protect your company's email and browsing with your GoodCrypto private server. * Protects email metadata and resists traffic analysis * Automatic encryption, decryption, and key management * All private keys stay on *your* server * Users don't change their email or browser software * Blocks web malware * Runs on your private server * Completely decentralized
Cerulean Hybrid Genome Assembler v0.1 Cerulean extends contigs assembled using short read datasets like Illumina paired-end reads using long reads like PacBio RS long reads. Cerulean v0.1 has been implemented with bacterial genomes in mind. I am not able to maintain and update the software due to change in research funding. However I will be happy to answer any queries or provide support and comments if you are interested in extending this algorithm. The method is fully described in Deshpande, V., Fung, E. D., Pham, S., & Bafna, V. (2013). Cerulean: A hybrid assembly using high throughput short and long reads. arXiv preprint arXiv:1307.7933. http://arxiv.org/abs/1307.7933
BBCalc (BodyBuilding Calculators) is a set of calculators related to body building and fitness topics.
The goal of the See&Touch project is to design/implement a special mouse for disabled people, which allows a person to fully control a computer by using just vision and one single body movement. This project develops hardware, firmware and software.
The 3D Slicer is freely available, open-source software for visualization, registration, segmentation, and quantification of medical image data. Follow the link for more info: http://slicer.org
This project is to implement an open source 3D sound layer. The sound layer will allow application sounds to come from their spatial location on screen. The early project will only pan sounds. Later versions will use 3d localization.
ABE is a small, fast and convenient program for visualizing and modeling experimental bioassay data. The data can be modeled using either polynomials or a more specific four-parameter model based upon the standard, sigmoidal dose-response curve.
Atlas2 Genome Analysis Pipeline on Amazon Web Services
This is the backend source code of the Atlas2-Cloud pipeline on Amazon which starts and terminates worker nodes, runs analysis and monitors worker instances. It is PRIMARILY meant to be used through Amazon Web Services (AWS) management console by looking for the public Atlas2-Cloud machine image. Alternatively, the code can also be used for running the pipeline from your computer. By installing this software on your computer you will be setting up your computer to act as the head node which would then run the pipeline from your computer.
Cellicone is a project to develop an artificial life organism with the necessary components to make it comparable to biological life as we know it. This includes components ranging from proteins to cells to organs to limbs, and many steps between.
Allows you to determine a new coumadin or warfarin regimen based on a previous coumadin regimen and INR. Should help develop anticoagulation regimens
MLE survival analysis: Gompertz, Weibull, Logistic and mixed morality.
DeDAY (Demography Data Analyses) is a tool of analyzing demography data. It supports Gompertz, Weibull and Logistic distributions. DeDay also supports mixed mortality models based on these distribution such as the Gompertz-Makeham distribution. Distributions such as Gompertz describes only age-dependent mortality, which increases over time. Mixed mortality models, such as in Gompertz-Makeham distribution, consider a more general case where mortality is consist of both age-dependent and in-dependent mortality. Mixed models partition mortality into exogenous and endogenous components, so that the intrinsic survivorship can be estimated without the interference from extrinsic noise. DeDAY supports both interval-censored data and exact event-time data. Using MLE (Maximum Likelihood Estimate), DeDAY fits statistic model to the data. DeDAY also calculates the variances and the multi-dimensional confidence limits of model parameters. DeDAY is free for academic users.
This is a Disaster Victim tracking system. It aims to make a distributed database for both onsite tracking and tracking via the web. It will utilize the Amateur Radio packet radio technology with X.25 as the communication medium, and expand later on.
Protect sensitive data that has been deleted from recovery.
When a file is deleted from a device the space for that file is merely de-allocated. In short: The DATA contained in that file still remains, and can be recovered. This can quickly become a security concern. There are various areas of business where this scenario is unacceptable: HIPAA Protected Medical Information, and Financial Data amongst them. Client Data must be protected from recovery in the event of theft. Blue-Pencil was created to fulfill that. "Blue-Pencil" protects sensitive data by "sanitizing" it - writing over it using special patterns designed to make data unrecoverable by traditional means before deletion thus keeping the data safe from prying eyes.