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Top Apps

  • PubNub: Realtime APIs, Global Infrastructure PubNub: Realtime APIs, Global Infrastructure Icon
    PubNub: Realtime APIs, Global Infrastructure Icon

    Harness the power of PubNub’s programmable APIs and robust global network to power realtime chat, geolocation, IoT, multiplayer games, and more.

    The realtime revolution is upon us. Users want data, and they want it now. Deliver the immersive, interactive experiences your audience craves with PubNub. Get to market quickly with pre-built SDKs, integrations, and serverless computing at the edge; then scale on a global network that delivers any message in under a quarter of a second with five 9’s reliability guaranteed.
  • Find out what (or who) is slowing down your network Find out what (or who) is slowing down your network Icon
    Find out what (or who) is slowing down your network Icon

    Get comprehensive network bandwidth analysis and performance monitoring with SolarWinds® Bandwidth Analyzer Pack.

    Network slow, but you don't know the cause? Use Bandwidth Analyzer Pack (BAP) to monitor and analyze network bandwidth performance and traffic patterns. With BAP, you can identify which users, applications, and protocols are consuming the most bandwidth. You can also monitor Wireless LAN Controller traffic to see what applications and clients are using your wireless network. Try it free for 30 days!
  • Bridge Designer and Contest Icon

    Bridge Designer and Contest

    A national virtual bridge engineering contest for kids of all ages.

    **Unfortunately, the Bridge Contest is no longer operational. We hope the code base will be of use to others with similar projects in mind.** A national virtual bridge engineering contest with prizes for middle and high school kids, grades 6 to 12, but anyone can enter for fun. Based on the award-wining Bridge Designer client software, now open source through this project. Web site infrastructure supports worldwide participation in qualifying and semifinal rounds with a tiny administrative staff. The new Rails back end is a RubyMine project. Thanks to JetBrains for this mega development environment!

    Downloads: 1,580 This Week Last Update: See Project
  • vcftools Icon

    vcftools

    A set of tools for working with VCF files, such as those generated by the 1000 Genomes Project. This project is migrating to github: https://vcftools.github.io/

  • My Simple LogBook Icon

    My Simple LogBook

    MSLB is a crossplatform Simple Logbook program / application to write work logs or even a diary. MSLB can also use a bunch of presets that you can add with a simple doubleclick :) Logs get saved in a simple folder system. And its all portable.

  • CSBB-v3.0 Icon

    CSBB-v3.0

    CSBB - Computational Suite for Bioinformaticians and Biologists

    CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX. Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. CSBB now also has capability to process public data. Providing User with End to End pipeline experience.

    Downloads: 14 This Week Last Update: See Project
  • MicroGP Icon

    MicroGP

    A multi-purpose extensible self-adaptive evolutionary algorithm

    MicroGP (uGP) is a versatile optimizer able to outperform both human experts and conventional heuristics in finding the optimal solution of hard problems. It is an evolutionary algorithm since it mimics some principles of the Neo-Darwinian paradigm.

  • Cloud Communications for Remote Teams Cloud Communications for Remote Teams Icon
    Cloud Communications for Remote Teams Icon

    Packed with Features to Support your Businesses Needs

    • 100% uptime, Patented design
    • Simple DIY Setup with Award Winning Support
    • Superior HD audio and video quality
  • Perl Web Scraping Project Icon

    Perl Web Scraping Project

    Perl Web Scraping Project

    Web scraping (web harvesting or web data extraction) is data scraping used for extracting data from websites.[1] Web scraping software may access the World Wide Web directly using the Hypertext Transfer Protocol, or through a web browser. While web scraping can be done manually by a software user, the term typically refers to automated processes implemented using a bot or web crawler. It is a form of copying, in which specific data is gathered and copied from the web, typically into a central local database or spreadsheet, for later retrieval or analysis. Web scraping a web page involves fetching it and extracting from it.[1][2] Fetching is the downloading of a page (which a browser does when you view the page). Therefore, web crawling is a main component of web scraping, to fetch pages for later processing. Once fetched, then extraction can take place. The content of a page may be parsed, searched, reformatted, its data copied into a spreadsheet, and so on.

    Downloads: 11 This Week Last Update: See Project
  • PanOCT

    Pan-genome Ortholog Clustering Tool

    PanOCT, Pan-genome Ortholog Clustering Tool, is a program written in PERL for pan-genomic analysis of closely related prokaryotic species or strains. Unlike traditional graph-based ortholog detection programs, it uses micro synteny or conserved gene neighborhood (CGN) in addition to homology to accurately place proteins into orthologous clusters.

    Downloads: 7 This Week Last Update: See Project
  • Forerunner X01 Toolkit Icon

    Forerunner X01 Toolkit

    ForeRunner X01 toolkit provides an easy access to Forerunner 201/301/305/305E GPS-units. There are multiple command line tools to read data from GPS into database and tools to export data in different formats like gpx and tcx.

  • EASER Icon

    EASER

    Ensembl Easy Sequence Retriever

    Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: 10.4137/EBO.S11335.

    Downloads: 5 This Week Last Update: See Project
  • PlaTypUS Icon

    PlaTypUS

    Plasmodium Typing Utility Software

    The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes.

  • ManageEngine now lets you patch computers from cloud ManageEngine now lets you patch computers from cloud Icon
    ManageEngine now lets you patch computers from cloud Icon

    ManageEngine Patch Manager Plus offers patching capabilities on cloud - Patch all OS updates and 550 third party apps on-demand and stay secure!

    Last year saw the hackers unleash their expertise in skills for a ransom - targeting those unpatched computers in data-critical institutions. Only if the computers were patched on time, billions of dollars could have been saved. ManageEngine’s Patch Manager Plus comes to your rescue, offering you an automated patching solution, now on cloud, for latest hotfixes of Windows updates and a wide range of third-party applications (over 550 of them).
    Automate patching with Patch Manager Plus, sit back & relax!
    Patch On Cloud Now
  • MOIRAI

    Simple Scientific Workflow System for CAGE Analysis

    Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data. MOIRAI has a graphical interface allowing wet-lab researchers to create, modify and run analysis workflows. Embedded within the workflows are graphical quality control indicators allowing users assess data quality and to quickly spot potential problems. MOIRAI package comes with three main workflows allowing users to map, annotate and perform an expression analysis over multiple samples.

    Downloads: 3 This Week Last Update: See Project
  • Automalator

    State Dependency deconstructor and mapper for C source code.

    Flowcharts not telling you what you want to know about some C source code? Try a State Dependency map! Every C source file is an implemention of a state machine. Implicit in the definition of a state machine is a network of dependencies between the states. The Automalator * deconstructs the C code into the core state machine * collates the transactions into the dependency net * generates a diagram-format file with the states and dependencies as the nodes and edges. Pre-requisites * Perl - tested with versions 5.12.3, 5.14.2 and 5.20.2, Windows, Linux and MAC * Get the Automalator by downloading the zip, or checking out or exporting the SVN trunk * copy the source code of interest into "project.c" * windows - double-click "src2map.bat" * linux & MAC - navigate the command line to the "project" folder, then run "src2map.sh" * open "project.gml" file with diagramming software.

    Downloads: 2 This Week Last Update: See Project
  • LMAP Icon

    LMAP

    Lightweight Multigene Analyses in PAML

    Maldonado E, Almeida D, Escalona T, Khan I, Vasconcelos V and Antunes A (2016) LMAP: Lightweight Multigene Analyses in PAML. BMC Bioinformatics, 17:354. doi: 10.1186/s12859-016-1204-5

    Downloads: 2 This Week Last Update: See Project
  • Uplug corpus tools

    Various tools for creating annotated parallel corpora including pre-trained tagging and parsing models for various languages, sentence alignment tools and word alignment tools. Uplug also includes a web-based interface for interactive sentence and word alignment and scripts for indexing and querying parallel corpora using the Corpus Work Bench CWB. Download 'uplug-main' first and then add other packages.

  • PheMaDB (Phenotype Microarray DataBase)

    PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: http://www.biomedcentral.com/1471-2105/12/109. Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.

  • Allelome.PRO

    A pipeline to define allele-specific genomic features

    Detecting allelic biases from high-throughput sequencing data requires an approach that maximises sensitivity while minimizing false positives. Here we present Allelome.PRO, an automated userfriendly bioinformatics pipeline, which uses high-throughput sequencing data from reciprocal crosses of two genetically distinct mouse strains to detect allele-specific expression and chromatin modifications. Allelome.PRO extends approaches used in previous studies that exclusively analysed imprinted expression to give a complete picture of the “allelome” by automatically categorising the allelic expression of all genes in a given cell type into imprinted, strain-biased biallelic or noninformative. Allelome.PRO offers increased sensitivity to analyse lowly expressed transcripts, together with a robust false discovery rate empirically calculated from variation in the sequencing data.

    Downloads: 1 This Week Last Update: See Project
  • OpenATPOL Icon

    OpenATPOL

    A reference implementation of the Polish geobotanical grid

    This project is a reference, open source implementation of the coordinate conversion algorithms for the Polish geobotanical grid called ATPOL.

    Downloads: 1 This Week Last Update: See Project
  • BeerFest DB

    Beer festival cellar management database and related software.

    The BeerFest DB project will be designed as a reusable software package to help organize beer festivals and record information concerning past events. Initially it will focus on tracking cask information (e.g., ordering, sales, quality control).

    Downloads: 0 This Week Last Update: See Project
  • Bridge Designer and Contest

    A national virtual bridge engineering contest for kids of all ages.

    A national virtual bridge engineering contest with prizes for middle and high school kids, grades 6 to 12, but anyone can enter for fun. Based on the award-wining Bridge Designer client software, now open source through this project. Web site infrastructure supports worldwide participation in qualifying and semifinal rounds with a tiny administrative staff. The new Rails back end is a RubyMine project. Thanks to JetBrains for this awesome development environment!

    Downloads: 0 This Week Last Update: See Project
  • Connect Bot

    Bot para unir 2 canales del IRC en 2 servidores distintos. Uso: ./ConnectBot.pl -s1 <servidor1> -s2 <servidor2> -c1 <canal1> -c2 <canal2> -n <nick>

    Downloads: 0 This Week Last Update: See Project
  • Corbata

    CORe microBiome Analysis Tools

    Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.

    Downloads: 0 This Week Last Update: See Project
  • ENLY

    Bioinformatic tool to improve draft genome assemblies by closing gaps

  • Eng-DB-2

    Eng-DB-2 is a light-weight engineering database. It allows to manage components/assemblies and their associated AVLs and technical documentation, assemble BOMs for finished goods and annotate these with quotations received from suppliers.

    Downloads: 0 This Week Last Update: See Project
  • FastAlign.pl Icon

    FastAlign.pl

    FastAlign is a perl script which uses the heuristic method of tfasty

    FastAlign.pl provides a more intuitive output to find exon-intron junctions. The query string is in amino acids and the hit string is in nucleotides. There are extra nucleotides at the end of the hit string (option -diff and by default = 10), that allow to verify if the intron start with common rules (5'-GTGCGA-... for group II intron and after an exonic T for group I intron). If you have Emboss, you can genarate a graphic with option -graph 1. Dependencies: - Perl - Bioperl - UNIX system - tfasty - Emboss (if you want a graphic)

    Downloads: 0 This Week Last Update: See Project
  • Downloads: 0 This Week Last Update: See Project
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