Source code from the Research Institute for Signals, Systems and Computational Intelligence http://fich.unl.edu.ar/sinc
PDFgetN is a program to process total scattering data obtained on neutron time-of-flight powder diffractometers and to obtain the atomic pair distribution function (PDF).
The ideal Operation System, BioInfoServOS, which is a specially customised system for scientists handling and analysing biological data, but also for easy use of daily official business handing, has been distributed. Offcial Website: [http://edu.bioinfoserv.org] (edu.bioinfoserv.org)
A program to identify Helitron given genomic sequences.
uDOS is a free operating system built on the FreeDOS kernel with DJGPP. uDOS provides an integrated suite of features inluding Perl, Python, etc., as well as a Watt-32 based networking environment and ELF library support. Can be run live from CD image.
First automated tool for classification of transposable elements in eukaryotic organisms.
It helps Research & Educational Institutions to support their use of the leading-edge technologies in the area oh TCP/IP based networking that contribute to scientific and educational studies.
ANY Database employing SQL, any system, any task TRANSFORM Your SQL between DBMS, different languages and from slow SQL to fast one, transform any of Your redundant task to work in organized and sustainable manner.
This is a database project that provide not only the data about the annotation of genome wide identified alternative promoter but also the software package for ChIP-Seq experiment data analysis for the study of tissue specific alternative promoter usage.
This is a complete framework for developing SOA Web Services in Perl, utilizing SOAP::Lite, mod_perl and Apache2. Components include a reverse proxy with Authen/Z and logging, .pm to WSDL generator and database resource pool handlers with ResourcePool.
BLibrestez Robotics Software Library Project
http://sourceforge.net/feeds/p/PROJECT-BLIBRESTEZ55ROBOTICS/issueupdates/basic BLIBRESTEZ55ROBOTICSPROJECT/downloads/basic http://sourceforge.net/feeds/p/PROJECT Copyright©2011-2020 BLibrestez55Ro
BTG Web Search Engine is developed for students or developers who are interested in search engine technology. The engine web will be written in C++, Java, Perl,and Python. At the beginning of the project, a simple search engine design will be used.
Blast Explorer facilitates Blast results exploration
Simulate the structural and copy number consequences of BFB
BFBsimulator simulates the structural and copy number consequences of breakage fusion bridge (BFB) cycles in silico. Hundreds of aCGH profiles of many different tumour types are now freely available and many of these newly surveyed genomes contain amplified oncogenes. The most commonly cited explanation for the processes underlying gene amplification is the the repeated fusion and breakage of chromosomes following the loss of a telomere. However, this proposition has never been fully investigated. Using BFBsimulator, we can ask: i) Can the complex patterns of amplification within cancer genomes really be generated by BFB cycles? ii) What visible effect might BFB cycles have on tumour copy number profiles? iii) Is there a specific copy number ‘signature’ of evolution though breakage fusion bridge cycles? iv) What is the prevalence of BFB cycling across different cancers?
Biological sequence analysis module used in generating CG clusters. Useful for basic sequence manipulations, regular expression based searches, and base compositional analysis.
CNV-WebStore is an integrated platform to analyse, store, visualise and interpret CopyNumber Variation data. Analysis is supported for Illumina data, all CNV-reports and raw data can be imported after third-party analysis. Contact system admin at http://cnv-webstore.uantwerpen.be for installation scripts
ChIPOTle is a peak-finding algorithm used to analyze ChIP-chip microarray data
CollagenFinder (CF) is a software tool for searching CLP sequences in
CollagenFinder (CF) is a software tool for searching CLP sequences in the given nucleotide sequence. CF scans nucleotide sequence in all six possible reading frames. The additional filter procedures provide more accurate CLP prediction: - detecting for a tryptophan residue and stop-codons and removing corresponding CLPs, - cutoff value by GXY repeat number. If we need CLP with length 36 and more we should use cutoff value equal to 4.
D.U.C.K (Determine segmentation of Unknown words by using Context Knowledge)is an NLP tool, which aims to find the correct segmentation for unknown words in written Hebrew. Statistics from different scopes will be used to determine the segmentation.
FOCIS finds features for functional follow-up
FOCIS (Feature Overlapper for Chromosomal Interval Subsets) performs an interval-based screen of a database of genomic features – ChIP-seq peaks, motif matches, and others – for overlap enrichment at a specific subset of genomic regions relative to a dataset-matched background. It was recently used to discover a novel enhancer that mediates drug resistance in melanoma.
A set of tools to process and analyze Fasta files. This project is inscribed in the field of Proteomics.
GoKo Project is a outside-school project created by students who are interested in Open-Source Community and dedicated their times and efforts with creating applications and modifications for forum software and web development.
Scripts to implement Hierarchical Annotation-Dependent Alignment (HADA) protocol for sequence alignment, and related functions.
HOPPscore is a simple application for evaluating the structural quality of theoretical or experimental protein structures. Protein are evaluated by comparing structure fragments to a reference dictionary of fragments from high resolution structures.
The HyperGlossary Project enables real-time annotations of web sites for the purpose of explaining jargon-heavy pages with pop-up definitions and other resources, such as powerpoints and videos.