Open Source PKI solutions
The OpenCA PKI Development Project is a collaborative effort to develop a robust, full-featured and Open Source out-of-the-box Certification Authority implementing the most used protocols with full-strength cryptography world-wide.
OpenSource Call Center and Dialer System
An Open Source (predictive) Dialer. OSDial is a full featured GPL dialer which does Manual, Power and Predictive dialing out of the box. Its easily installed through one of our .iso images. Install manual available at http://store.osdial.com/ Full details available at web site (http://osdial.com).
Full featured free PACS based on dcm4chee and mysql, with remote web accession available for Linux in Debian packaging format for x86 32 and 64 bit processors. (KEYWORDS: PACS,DICOM,HL7,WORK LIST)
A bioinformatics tool to PRe-process and show INformation of SEQuence data. The tool is written in Perl and can be helpful if you want to filter, reformat, or trim your sequence data. It also generates basic statistics for your sequences.
A fast, unobtrusive and modern cross-platform GUI toolkit. Agar fully exploits hardware acceleration where available, but also supports simple frame-buffer interfaces. Agar is stand-alone and easily portable to new platforms and graphics systems.
The Symbiont Workstation Manager provides a Webmin-based administration tool that configures and monitors LTSP diskless thin clients. More than a user-friendly front-end to LTSP, the Workstation Manager incorporates additional features (bells & whistles).
The DeconSeq tool can be used to automatically detect and efficiently remove sequence contamination from genomic and metagenomic datasets. It is easily configurable and provides a user-friendly interface. More at http://deconseq.sourceforge.net
GPL-licensed Electronic Medical Record and Practice Management system for medical providers that runs in any web browser in multiple languages. It provides an XML-RPC backend and multiple import and export formats, as well as reporting and other features
The BEE Project is a suite of tools supporting Business Intelligence project implementation including ETL tool and OLAP server and a thin client. The ROLAP server ensures multipass SQL generation and powerful cache management (utilizes MySQL RDBMS).
FSA is a probabilistic multiple sequence alignment algorithm which uses a "distance-based" approach to aligning homologous protein, RNA or DNA sequences.
FragGeneScan is an application for finding (fragmented) genes in short reads. It can also be applied to predict prokaryotic genes in incomplete assemblies or complete genomes. FragGeneScan was first released through omics website (http://omics.informatics.indiana.edu/FragGeneScan/) in March 2010, where you can find its old releases. FragGeneScan migrated to SourceForge in October, 2013. For users' convenience, we also make FragGeneScan available at GitHub: (https://github.com/COL-IU/FragGeneScan).
An automatic tool for binning metagenomics sequences
MaxBin is a software for binning assembled metagenomic sequences based on an Expectation-Maximization algorithm. Users could understand the underlying bins (genomes) of the microbes in their metagenomes by simply providing assembled metagenomic sequences and the reads coverage information or sequencing reads. For users' convenience MaxBin will report genome-related statistics, including estimated completeness, GC content and genome size in the binning summary page. Users could use MEGAN or similar software on MaxBin bins to find out the taxonomy of each bin after the binning process is finished. The most current version is 2.2.4. MaxBin was published on Microbiome journal (2:26)! Please cite the Microbiome paper if you use MaxBin in your work. More information can be found at the official MaxBin website: http://downloads.jbei.org/data/MaxBin.html to
University Schedule Planner is an application with a web interfaced program that, given a set of teachers, a set of Studends and a set of classes each one with several restrictions, builds a schedule for the university classes. The actual implementation
HL7 message API and helper tools
This project provides a simple but flexible Perl Toolkit for using the HL7 protocol. The toolkit consists of a Perl API, an implementation of a pluggable forking HL7 server, and an HL7 message queue daemon for developing HL7 capable applications in Perl.
myTemp is a thermometer for PalmOS PDAs. It uses a Dallas Semiconductor MicroLan sensor and provides logging functionality and multi-sensor support.
Perl-Programs to extract information (and visualize them with gnuplot) from data-files from the PZG Particle Sampler from "rr-elektronik" (see http://www.rr-elektronik.de). Linux/KDE-version, GUI written in QT or Gambas. Win32-ver: pzg-tools.npage.de
This is a set of optimization models and supporting software for exploring the relationship between patient scheduling and nursing unit occupancy in hospitals.
Tapeworm is a Gnome-desktop health profiler. Keep track of your diet, including calories and %'s of fat, carbs, and protein, exercise, blood glucose, weight, and anything else! Easily produce user configurable plots and printable reports.
Bike Power, calculates the power output and power consumption for bicycling.Given things like riding speed, body weight, hill grade, and wind speed it give you a table with power output and power consumption.
Consensus Variant Effect Classification
The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the modules. SVMlight, SIFT, Polyphen2, SNPs&GO and Mutation Assessor are the property of their respective authors and institutions and are not distributed in this package.
A system for managing documentation files through the web. Includes automatically generated thumbnails, version control, license and language tracking, metadata-based searching, and author-ownership control. Suitable for multi-project use.
Neurospaces is a development center for tools in computational neuroscience. See http://www.neurospaces.org/
A neuroscientific knowledge management system for the published literature
A bioinformatics tool to identify and remove rRNA sequences from metagenomic and metatranscriptomic datasets. The rRNA-like sequences are classified by domain, subunit. and bacterial phyla. Coverage plots for the top hits are provided as well.
ASSD is a simple biological sample database focused on the storage of proteomics data. It tracks every processing step incl. results throughout a sample's lifetime. Next to proteomics data it can also store other results like FACS or Western Blots.