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Bio::Prospect:: is a Perl API to the PROSPECT threading application. The modules provide for program execution, results parsing, multiple sequence alignments inferred from pairwise sequence-structure alignments, and rudimentary homology models.2 weekly downloads
This is a complete framework for developing SOA Web Services in Perl, utilizing SOAP::Lite, mod_perl and Apache2. Components include a reverse proxy with Authen/Z and logging, .pm to WSDL generator and database resource pool handlers with ResourcePool.
BLibrestez Robotics Software Library Project
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Simulate the structural and copy number consequences of BFB
Biological sequence analysis module used in generating CG clusters. Useful for basic sequence manipulations, regular expression based searches, and base compositional analysis.
ChIPOTle is a peak-finding algorithm used to analyze ChIP-chip microarray data
D.U.C.K (Determine segmentation of Unknown words by using Context Knowledge)is an NLP tool, which aims to find the correct segmentation for unknown words in written Hebrew. Statistics from different scopes will be used to determine the segmentation.
Scripts to implement Hierarchical Annotation-Dependent Alignment (HADA) protocol for sequence alignment, and related functions.
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This project will hope to provide an application (using the Java coding language) that will manage facts and citations used in writing research reports. The application will have the ability to manage facts and create citations in accepted formats.
Perl script for automatic distinct processing of LaTeX programmed inline drawings allows use of incompatible illustration tools in the same document and critically reduce recompilation time.
Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.
A CMS based on Perl for online keeping track of friends details at one place. One can see friend's friends details too with restricted features on.
A fast efficient way of dealing with large amounts of Blast or Repeatmasker data.
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Reefknot is an attempt to create an iCal (RFC 2445) compliant toolkit in Perl. This toolkit will then be used to develop at least one server and one client as reference implementations.
SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.
iCamp is a research and development project funded by the European Commission. The project aims at creating an infrastructure for collaboration and networking in Higher Education across systems.