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Top Apps

  • Focus on your Business with an integrated Business Cloud Focus on your Business with an integrated Business Cloud Icon
    Focus on your Business with an integrated Business Cloud Icon

    Reliable & Secure Communications Systems

    • 90+ features: video, file management, cloud phones
    • 99.999% financially backed uptime SLA
    • Expert support, certified by J.D. Power 2 years in a row
  • Looking for an automated testing tool? Looking for an automated testing tool? Icon
    Looking for an automated testing tool? Icon

    mabl is the only ML-driven test automation service that automatically maintains tests and identifies regressions for you.

    mabl provides code-free testing, integrated with your pipeline with no infrastructure to maintain. mabl uses machine learning models to automatically identify application issues, including javascript errors, visual regressions, broken links, increased latency, and more.
  • SAM tools

    SAM (Sequence Alignment/Map) is a flexible generic format for storing nucleotide sequence alignment. SAMtools provide efficient utilities on manipulating alignments in the SAM format. The main samtools source code repository moved to GitHub in March 2012. For ongoing development since then, see http://github.com/samtools/samtools

  • scalpel

    Genetic variants discovery tool

    Bioinformatics pipeline for discovery of genetic variants from NGS reads.

  • Lipi Toolkit

    Lipi Toolkit is a generic toolkit for online Handwriting Recognition (HWR), and contains tools and algorithms for HWR. The current versions focus on isolated shapes and characters. Details at http://lipitk.sourceforge.net.

    Downloads: 51 This Week Last Update: See Project
  • Pretty Damn Quick Queueing Model Package

    Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.

    Downloads: 20 This Week Last Update: See Project
  • General Graphics Interface

    GGI stands for "General Graphics Interface", and it is a project that aims to develop a reliable, stable and fast graphics system that works everywhere. We want to allow any program using GGI to run on any platform requiring at most a recompile.

    Downloads: 16 This Week Last Update: See Project
  • 2018 Network Intelligence Planning Guide 2018 Network Intelligence Planning Guide Icon
    2018 Network Intelligence Planning Guide Icon

    Get insights on net neutrality, cloud readiness, security and WAN transformation.

    Networking is becoming cloudier, hybrid and more Internet-centric. IT managers now own user experience, whether they own the networks or not. Get our latest ebook to learn how network intelligence will help you adapt to a quickly changing Internet-centric environment.
    Are you involved with your company's network performance/operations team?
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  • BisSNP

    Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller

    Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other bisulfite treated sequencing) to determine genotypes and methylation levels simultaneously. It works for both of single-end and paired-end reads.Specificity and sensitivity has been validate by Illumina IM SNP array. In default threshold 30X data (Phred scale score > 20), it could detect 92.21% heterozygous SNPs with 0.14% false positive rate Cytosine calling is not only based on reference context, so it could detect non-reference cytosine context. Google group for help: http://goo.gl/zL7Nj

    Downloads: 5 This Week Last Update: See Project
  • math-linux

    This project is for maintaining a linux system that concentrates on math, logic, and geometry related softwares.

    Downloads: 5 This Week Last Update: See Project
  • FLOSSmole Icon

    FLOSSmole

    FLOSSmole (formerly OSSmole) is a set of tools for gathering metrics and publishing analyses about development of free/libre/open source projects. UPDATE: Our data is now released to Google Code. Please see our new home page at http://flossmole.org

  • BamBam

    Tools for genomic analysis

    BamBam includes numerous tools for analyzing DNA next-generation sequencing data. Tools are provided for calling SNPs and indels, identifying large scale deletions, tabulating counts of mapped reads, methylation analysis, and more. Depends on SAMtools (http://samtools.sourceforge.net/) and BAMtools (https://github.com/pezmaster31/bamtools). Also uses BioPerl, which is included in the download tarball.

    Downloads: 3 This Week Last Update: See Project
  • Evoker

    Evoker is a graphical tool for plotting genotype intensity data in order to assess quality of genotype calls. It implements a compact, binary format which allows rapid access to data, even with hundreds of thousands of observations. PLEASE NOTE: This source repository is no longer active. See the github link above for the latest version.

  • Identify and respond to threats before damage is done Identify and respond to threats before damage is done Icon
    Identify and respond to threats before damage is done Icon

    A SIEM that makes it easy to use logs for security, compliance, and troubleshooting.

    SolarWinds® Log & Event Manager (LEM) delivers comprehensive Security Information and Event Management (SIEM) capabilities in a highly affordable, easy-to-use, and quick-to-deploy virtual appliance. LEM provides the visibility, security, and control that IT professionals need to alert on and respond to security threats, and assist in meeting the regulatory compliance guidelines of HIPAA, PCI DSS, SOX, and more. Try it free for 30 days!
  • CSBB-v2.1 Icon

    CSBB-v2.1

    Computational Suite For Bioinformaticians and Biologists

    CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 17 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc.

    Downloads: 1 This Week Last Update: See Project
  • Bio::NEXUS

    If you manage phylogenetic data, Bio::NEXUS can make your life easier with a library and ready-made tools to manipulate and visualize NEXUS files (see http://www.molevol.org/nexplorer and http://search.cpan.org/dist/Bio-NEXUS/doc/Tutorial.pod).

  • CSBB-v2.0 Icon

    CSBB-v2.0

    Computational Suite for Bioinformaticians and Biologists

    CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 16 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc.

    Downloads: 0 This Week Last Update: See Project
  • Chromatin Consortium Tools

    A collection of utilities, developer tools and libraries developed by the Maize Functional Genomics of Chromatin Consortium

    Downloads: 0 This Week Last Update: See Project
  • DIASER Icon

    DIASER

    Cloud storage class, open source software.

    DIASER, Geo-data duplication long-term archive system & WAN vault. Manage mixed data archives generated by existing backup software. Ensure availability using commodity hardware. Retain administrative and financial control.

    Downloads: 0 This Week Last Update: See Project
  • EACO

    Enrichment analysis for customized organisms

    Downloads: 0 This Week Last Update: See Project
  • Fanimae

    Fanimae is a desktop music information retrieval system.

    Downloads: 0 This Week Last Update: See Project
  • Laboratory for Genome Bioinformatics

    Code repository for the Laboratory for Genome Bioinformatics at Texas A&M. The LGB project was initiated primarily to support biologists at Texas A&M needing help with bioinformatics in order to use new genomic technologies.

    Downloads: 0 This Week Last Update: See Project
  • LogOS & PathOS

    A FOSS operating system that aims to meet NSA's TPEP TCB A1 evaluation standard while retaining application compatibility at minimal performance overhead.

    Downloads: 0 This Week Last Update: See Project
  • Maximal Clique Motif Reduction

    Maximal Clique Motif Reduction (MCMR) is a software program for running and then combining the output of multiple motif finder programs, such as MEME, AlignACE and Weeder, into a set of consensus predictions with associated confidence rankings.

    Downloads: 0 This Week Last Update: See Project
  • OSG Scalability Area Tools

    This project collects the software developed as part of the OSG Scalability, Reliability and Usability Area.

    Downloads: 0 This Week Last Update: See Project
  • OncoIMPACT

    Cancer driver prediction via integrative omics

    OncoIMPACT is a model-driven approach to integrate omics profiles (genomics, transcriptomics etc.) and provides patient-specific cancer driver gene predictions.

    Downloads: 0 This Week Last Update: See Project
  • OpenCloudAV Icon

    OpenCloudAV

    OpenCloudAV is the first open source multi-engine based malware analysis service from the network cloud. This project is in alpha release, run only in GNU/Linux, and is mainly developed using Perl SOAP::Lite module. Version 0.2 alpha is available now

  • Sabeti Lab Data System

    An open-source data management, analysis and visualization system to make the process of the scientific data development clean, easily reproducible, and easily sharable with the outside world.

    Downloads: 0 This Week Last Update: See Project
  • Scenario Data Selector

    The Scenario Data Selector is a Perl script that serves up scenario data on the web. Users can browse data and choose to show by value or as growth rates or indices. Data can be shown by region or indicator - the script takes care of regional aggrega

    Downloads: 0 This Week Last Update: See Project
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