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ProgPorts is an administrative and easy user interface to hundreds of proteomics, molecular dynamics, and protein crystallography programs. It is a hybrid of the prog/setup system, developed at Johns Hopkins University, and GNU-Darwin ports system.
Now on beta status. Maintence of a dedicated amateur server using open source software and implementeing all of them. The projects have a bug tracker, wiki, community portal, forums, mail list and a lot of more.