The Janelia Automated Animal Behavior Annotator
The Janelia Automatic Animal Behavior Annotator (JAABA) is a machine learning-based system that enables researchers to automatically compute interpretable, quantitative statistics describing video of behaving animals. Through our system, users encode their intuition about the structure of behavior by labeling the behavior of the animal, e.g. walking, grooming, or following, in a small set of video frames. JAABA uses machine learning techniques to convert these manual labels into behavior detectors that can then be used to automatically classify the behaviors of animals in large data sets with high throughput. JAABA combines an intuitive graphical user interface, a fast and powerful machine learning algorithm, and visualizations of the classifier into an interactive, usable system for creating automatic behavior detectors. Documentation is available at: http://jaaba.sourceforge.net/
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes. It can be used from MATLAB, Python, C++, or Fortran.
Library for 2D/3D geometry in Matlab.
Geometry library for Matlab in 2D and 3D. Contains function for creation and manipulation of basic shapes, computing intersections, transformation, display... The project is being moved to GitHub: http://github.com/dlegland/matGeom
A speech recognition system using Matlab/Simulink/Stateflow.
This project provide hidden Markov model speech recognition system by using Matlab/Simulink/Stateflow.
A Numerical MRI Simulation Platform
The MRiLab is a numerical MRI simulation package. It has been developed and optimized to simulate MR signal formation, k-space acquisition and MR image reconstruction. MRiLab provides several dedicated toolboxes to analyze RF pulse, design MR sequence, configure multiple transmitting and receiving coils, investigate magnetic field related properties and evaluate real-time imaging technique. The main MRiLab simulation platform combined with those toolboxes can be applied to customize various virtual MR experiments which can serve as a prior stage for prototyping and testing new MR technique and application. If you find MRiLab useful for your work, please cite this paper: Fast Realistic MRI Simulations Based on Generalized Multi-Pool Exchange Tissue Model. IEEE Transactions on Medical Imaging. 2016. doi: 10.1109/TMI.2016.2620961 MRiLab v1.3 is available now, with supports for generalized multicomponent tissue model.
This project, developed at UCL London, provides code for tomographic reconstruction. NiftyRec is written in C and has Python and Matlab extensions. Computationally intensive functions have a GPU accelerated version based on CUDA.
A collection of kernel-based algorithms for Matlab.
KMBOX is a collection of MATLAB programs that implement kernel-based algorithms, with a focus on regression algorithms and online algorithms. It can be used for nonlinear signal processing and machine learning.
MPT is a toolbox that supplies cross-platform libraries for real-time perception primitives, including face detection, eye detection, blink detection, and color tracking.
Matlab Toolbox for reading and writing videos.
Matlab Toolbox to process video files, which consists on a set of classes for reading, writing, correcting light changes and generating gaussian pyramids in real time. This toolbox is designed for Windows x64, Max OS X x64 and Linux x64. Through to use of Ffmpeg, it can reproduce and create videos very fast and also do no require to load the entire video file in memory. In addition the C++ code is already compiled in order to simplify the toolbox installation. In order to stay tuned for updates, you can follow the Matlab VideoUtils on Twitter (@VideoUtils): https://twitter.com/#!/VideoUtils If anyone is interested in collaborate, please contact to me -> https://sourceforge.net/sendmessage.php?touser=3811831
Tail probability calculator for continuous random variable
A suite of Matlab functions that calculate the tail probability / cdf / pdf / quantile of linear combination of random variables in one of the following classes: (1) symmetric random variables with support on the real axis (normal, Student's t, uniform and triangular); (2) random variables with support on the positive real axis (chi-squared and log-Lambert W x chi-squared distributions; inverse gamma distribution is temporarily disabled due to numerical issues).
Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.
Implementation of duration high-order hidden Markov model in Matlab.
Implementation of duration high-order hidden Markov model (DHO-HMM) in Matlab with application in speech recognition.
The Sick LIDAR Matlab/C++ Toolbox offers stable and easy-to-use C++ drivers for Sick LMS and Sick LD LIDARs. It provides a Matlab Mex interface for streaming LIDAR returns directly into Matlab. Also included are config utilities, examples, and tutorials.
Bifurcation analysis for delay-differential equations
DDE-BIFTOOL is a set of routines for performing numerical bifurcation analysis of delay-differential equations, running in Matlab or Octave. It was originally created by Koen Engelborghs at KU Leuven (Belgium).  Tutorial demo <http://ddebiftool.sourceforge.net/demos/neuron/html/demo1_simple.html> shows the output of an illustrative demo. <http://ddebiftool.sourceforge.net> links to documentation, a list of contributors and current maintainers. The original DDE-BIFTOOL webpage at KU Leuven  stores versions up to 3.0 and their documentation.  <http://twr.cs.kuleuven.be/research/software/delay/ddebiftool.shtml>  <https://www.gnu.org/software/octave> Further tutorials (by M Bosschaert) at <https://sites.google.com/a/uhasselt.be/maikel-bosschaert/home> (pdf files).
A high-level python to matlab(tm) bridge. Let's matlab look like a normal python library.
SWIG language module for Octave
The collection of MATLAB compatible routines for Mechanical Trading Systems. Released ta-lib - MATLAB MEX API to www.ta-lib.org . Related projects: http://sourceforge.net/projects/wlmllink and http://sourceforge.net/projects/algotrade.
Matlab's MAT-file I/O API in JAVA. Supports Matlab 5 MAT-flie format reading and writing. Written in pure JAVA.
Retinal vessel detection using MATLAB
NOTE: This project is now hosted at GitHub. Please follow the link below to visit its new home.
A Matlab software to estimate Euler pole parameters
The EPC software calculates the expected velocities for any points located on the earth’s surface given the relevant Euler pole parameters and estimates the Euler pole parameters given the observed velocities of a set of sites located on the same tectonic plate. Keywords: Direct Euler pole problem, Inverse Euler pole problem
Units for computational cybernetics
CyberUnits is a cross-platform class library for rapid development of high-performance computer simulations in life sciences. It supports modelling for biomedical cybernetics and systems biology with Object Pascal, S and Matlab.
Software for simulating the flight path of high power rockets in six-degree-of-freedom. This software runs with Octave or Matlab and can simulate a wide range of scenarios including parachute recovery and multiple stage flights.
A MATLAB toolbox for simulating the movement of the iRobot Create. Contains multiple GUIs for creating maps and other input, showing the movement of the Create, and replaying a previously saved session.
A particle swarm optimization demo written by students in the digital communication msc program (2010) at uni-kiel.
A program to convert different GPS date formats.
GPS Date Converter (GDC) is a program to convert six different date formats, including: (1) Decimal year, (2) Year, Month, Day, (3) Year, Day of year, (4) GPS Week, Day of week, (5) Julian date, and (6) Modified Julian date. These formats are quiet common in Earth Sciences, specially GPS applications. More information can be found in the GDC website.