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Top Apps

  • Pyramid - The Complete Self-Service Analytics Platform Pyramid - The Complete Self-Service Analytics Platform Icon
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  • timetools (for r-cran)

    Seasonal/Sequential (Instants/Durations, Even or not) Time Series

    Objects to manipulate sequential and seasonal time series. Sequential time series based on time instants and time durations are handled. Both can be regularly or unevenly spaced (overlapping durations are allowed). Only POSIX* format are used for dates and times. The following classes are provided : POSIXcti, POSIXctp, TimeIntervalDataFrame, TimeInstantDataFrame, SubtimeDataFrame ; methods to switch from a class to another and to modify the time support of series (hourly time series to daily time series for instance) are also defined. Tools provided can be used for instance to handle environmental monitoring data (not always produced on a regular time base).

    Downloads: 2 This Week Last Update: See Project
  • Qair (for r-cran)

    a R package. 'Qair' gives access to data bases used by air quality monitoring associations in France. It also contains functions to manipualte air quality datas.

  • R packages (maintained by YJLEE) Icon

    R packages (maintained by YJLEE)

    R packages for PK/PD modeling, BE/BA, drug stability, ivivc, etc.

    These R packages are developed for data analysis of PK/PD modeling, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM). They include bear, ivivc, PKfit, stab and tdm.

  • SPiCEv2.1 Icon

    SPiCEv2.1

    Splicing Prediction in Consensus Element

    SPiCEv2.1 is a tool to predict the splice alteration of variant occuring in consensus splice site (Donor: -3; +6 and Acceptor: -12; +2) SPiCEv2.1 is available in portable application by an auto-extractor or zip files You can also download SPiCE in zip file with the link: https://sourceforge.net/projects/spicev2-1/files/SPiCEv2_1_1.zip/download To predict alteration of consensus regions by a variant, SPiCE calculates MES and SSF-like score and combines these two scores by logisitic regression If you have questions or problems, please contact me to: r.leman@baclesse.unicancer.fr

    Downloads: 17 This Week Last Update: See Project
  • fscaret_shiny

    UI for fscaret

    User Interface (ui) application which implements the automated feature selection provided by the 'fscaret' package of R-environment.

    Downloads: 0 This Week Last Update: See Project
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  • BEMoDA

    Dissolution profile comparison Model Dependent-Independent Approach

    Dissolution profile comparison (Biowaiver aid) Model Dependent-Independent Approach scripts for in-vitro dissolution profile comparison as proposed by Sathe et al. in 1996 (Sathe PM, Tsong Y, Shah VP. In-vitro dissolution profile comparison: statistics and analysis, model dependent approach. Pharm Res. 1996 Dec;13(12):1799-803) and Tsong et al. in 1996 (Tsong Y, Hammerstrom T, Sathe P, Shah VP. (1996) Statistical Assessment of Mean Differences between Two Dissolution Data Sets, Drug Info. J. 30:1105-1112).

    Downloads: 0 This Week Last Update: See Project
  • OpenM++

    OpenM++: open source microsimulation platform

    OpenM++ is an open source microsimulation platform inspired by and compatible with Modgen. OpenM++, compared to its closed source predecessor Modgen, has advantages like portability, scalability and open source. It is not a copy of Modgen, but a new, functionally equivalent implementation of the publicly available language specification.

    Downloads: 0 This Week Last Update: See Project
  • PANDA Icon

    PANDA

    A comprehensive and flexible quantification tool for proteomics data

    PANDA is a comprehensive and flexib tool for quantitative proteomics data analysis, which is developed based on our solid foundations in quantitative proteomics for years. Several novelties have been implemented in it. First, we implement the advantage algorithms of LFQuant (Proteomics 2012, 12, (23-24), 3475-84) and SILVER (Bioinformatics 2014, 30, (4), 586-7) into PANDA. Second, we consider the state-of-art concept of quantification reliability in this quantitative workflow. On the levels of spectra, peptides and proteins, PANDA works out a few quantitative filters and new scores for quantification confidence. Third, PANDA is designed for processing proteomics big data in parallel.

    Downloads: 0 This Week Last Update: See Project
  • SimpleITK Icon

    SimpleITK

    SimpleITK: a simplified layer build on top of the Insight Toolkit (ITK), intended to facilitate its use in rapid prototyping, education and interpreted languages.

  • TXM Icon

    TXM

    Unicode-XML-TEI text/corpus analysis platform

    TXM is a free and open-source cross-platform Unicode & XML based text/corpus analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in. DOWNLOAD LATEST VERSION OF TXM : http://textometrie.ens-lyon.fr/spip.php?rubrique61&lang=en TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP full text search engine (http://cwb.sourceforge.net) and a range of statistical functions (factorial analysis, classification, cooccurrency analysis, etc.) based on R packages (http://www.r-project.org). Read the scientific background at the Textométrie project web site http://textometrie.ens-lyon.fr/?lang=en. Read a full description at the TEI Tools wiki http://wiki.tei-c.org/index.php/TXM.

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  • CyberUnits Icon

    CyberUnits

    Units for computational cybernetics

    CyberUnits is a cross-platform class library for rapid development of high-performance computer simulations in life sciences. It supports modelling for biomedical cybernetics and systems biology with Object Pascal, S and Matlab.

    Downloads: 3 This Week Last Update: See Project
  • Biomechanics Icon

    Biomechanics

    Computer programs for application in Sports science, Physical Culture, among others. By Enrique R.P. Buendía Lozada. buendiaenr@gmail.com , Benemérita Universidad Autónoma de Puebla (BUAP), México. (Software without any warranty).

  • rcqp

    R interface to the Corpus Query Protocol

    Implements the Corpus Query Protocol as a package for the R statistical environment. It allows to query linguistic corpora and manipulate the data as native R objects. It is based on the CWB software.

    Downloads: 0 This Week Last Update: See Project
  • Hyperspectral data analysis in R

    Handling and basic analysis of hyperspectral data in R

    The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal.

    Downloads: 6 This Week Last Update: See Project
  • Barber-Cushman Model

    Barber-cushman model scripted in R

    Downloads: 0 This Week Last Update: See Project
  • Bio7 Icon

    Bio7

    The application Bio7 is an integrated development environment for ecological modelling and contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.

  • COHCAP

    City of Hope CpG Island Analysis Pipeline

    COHCAP (City of Hope CpG Island Analysis Pipeline) is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). It provides QC metrics, differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, and visualization of methylation values. Please note: 1) The standalone version of COHCAP is no longer being updated. Please see the Bioconductor version: http://bioconductor.org/packages/release/bioc/html/COHCAP.html 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Bioconductor Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download

    Downloads: 9 This Week Last Update: See Project
  • TEACUP Icon

    TEACUP

    TCP Experiment Automation Controlled Using Python

    TEACUP automates many aspects of running TCP performance experiments in a specially-constructed physical testbed. TEACUP enables repeatable testing of different TCP algorithms over a range of emulated network path conditions, bottleneck rate limits and bottleneck queuing disciplines. TEACUP utilises a text-based configuration file to define experiments as combinations of parameters specifying desired network path and end host conditions. When multiple values are provided (e.g. for TCP congestion control algorithm), an experiment is made up of multiple tests. For each experiment and test, TEACUP collects a range of data, such as tcpdump files of traffic seen or TCP stack information (e.g. using Web10G). TEACUP also collects a variety of metadata from the end hosts and bottleneck router, such as the actual OS/kernel version(s) used. TEACUP also provides some simple tools for analysing the results of experiments, such as plotting a flow's experienced RTT over time.

    Downloads: 2 This Week Last Update: See Project
  • CABBaGe Icon

    CABBaGe

    Classification Algorithm Based on a Bayesian method for Genomics

    Downloads: 0 This Week Last Update: See Project
  • Panacea

    PAN And Core-gEnome Analysis

    A tool to calculate the Pan-Genome of a set of annotated genomes

    Downloads: 0 This Week Last Update: See Project
  • SD_EXPERT

    This application allow user to predict dissolution profile of solid dispersion systems based on algorithms like symbolic regression, deep neural networks, random forests or generalized boosted models. Those techniques can be combined to create expert system. Application was created as a part of project K/DSC/004290 subsidy for young researchers from Polish Ministry of Higher Education.

    Downloads: 1 This Week Last Update: See Project
  • MoCObench

    Benchmark instances for multiobjective combinatorial optimization

    Benchmark instances for multiobjective combinatorial optimization

    Downloads: 0 This Week Last Update: See Project
  • incertR

    Incertitudes de Mesures de la Qualité de l'Air (Gaz et Particules)

    Ensemble de fonctions permettant, à partir d'une base de données contenant les paramètres analyseurs, de réaliser les calculs d'incertitudes sur les mesures automatiques agrégrées de qualité de l'air.

    Downloads: 2 This Week Last Update: See Project
  • biOP

    biOP [bio~ObjectPascal/bio~Delphi] bioinformatics libraries

    Downloads: 3 This Week Last Update: See Project
  • Cygwin Ports Icon

    Cygwin Ports

    Repository of desktops and programs for the Cygwin platform

    A large repository of open-source programs built for Cygwin, including X11 desktops, language interpreters, multimedia frameworks, cross-compiler toolchains, and much more. Also hosted here is the cygport tool for building Cygwin packages. cygport releases and the Ports Git repositories are hosted here; Ports packages are available from the website.

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