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Top Apps

  • Got mySQL? Get the Edge, Toad Edge Got mySQL? Get the Edge, Toad Edge Icon
    Got mySQL? Get the Edge, Toad Edge Icon

    Your next-gen toolset for MySQL database environments

    If you organization takes advantage of the cost-effective, flexible MySQL open source database platform, then you need a toolset that supports your commitment to open source relational databases. Toad Edge for MySQL has what you need and helps you ramp up on MySQL quickly, ensuring faster time to value.
  • The First VoIP Communications Cloud in the World The First VoIP Communications Cloud in the World Icon
    The First VoIP Communications Cloud in the World Icon

    The Smarter Business Phone Solution

    • Powerful Unified Communication Features
    • Fast, Easy, Free Setup & Install
    • Trusted by 47,000+ Companies in 100 Countries
  • Cygwin Ports Icon

    Cygwin Ports

    Repository of desktops and programs for the Cygwin platform

    A large repository of open-source programs built for Cygwin, including X11 desktops, language interpreters, multimedia frameworks, cross-compiler toolchains, and much more. Also hosted here is the cygport tool for building Cygwin packages. cygport releases and the Ports Git repositories are hosted here; Ports packages are available from the website.

  • TXM Icon

    TXM

    Unicode-XML-TEI text/corpus analysis platform

    TXM is a free and open-source cross-platform Unicode & XML based text/corpus analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in. DOWNLOAD LATEST VERSION OF TXM : http://textometrie.ens-lyon.fr/spip.php?rubrique61&lang=en TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP full text search engine (http://cwb.sourceforge.net) and a range of statistical functions (factorial analysis, classification, cooccurrency analysis, etc.) based on R packages (http://www.r-project.org). Read the scientific background at the Textométrie project web site http://textometrie.ens-lyon.fr/?lang=en. Read a full description at the TEI Tools wiki http://wiki.tei-c.org/index.php/TXM.

  • SimpleITK Icon

    SimpleITK

    SimpleITK: a simplified layer build on top of the Insight Toolkit (ITK), intended to facilitate its use in rapid prototyping, education and interpreted languages.

  • Qair (for r-cran)

    a R package. 'Qair' gives access to data bases used by air quality monitoring associations in France. It also contains functions to manipualte air quality datas.

  • Bio7 Icon

    Bio7

    The application Bio7 is an integrated development environment for ecological modelling and contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.

  • Multi-vendor storage monitoring simplified Multi-vendor storage monitoring simplified Icon
    Multi-vendor storage monitoring simplified Icon

    Monitor your multi-vendor storage to help ensure your applications get the performance & capacity they need with SolarWinds® Storage Resource Monitor.

    SolarWinds Storage Resource Monitor (SRM) gives you multi-vendor storage performance monitoring and alerting to help ensure peak storage performance. Automated capacity planning helps you predict storage shortages, reclaim space, and prevent application outages. SRM integrates with other Orion® Platform products to provide end-to-end visibility into the application stack, and lets you easily troubleshoot performance issues from application to storage.
  • Ship Lock Scheduling

    Scheduling lockages at ship locks with several parallel lock chambers

    This Java software includes algorithms of combinatorical optimization for the NP-hard offline ship lock scheduling problem. Solutions and performed computations can be displayed graphically. Besides, there is a framework for generating test instances and running these in parallel, as well as R/JGR code for statistical evaluation. Some tools for estimating the quality of calculated solutions will be further improved. Initially the software was developed within a project of TU Berlin regarding the Kiel Canal. See project wiki for conditions that should be met by applications.

  • Waterloo

    Java-based scientific graphics

    Java-based scientific graphics with support for Java, Groovy, MATLAB, Python, the R statistical environment, Scala and SciLab.

  • Biomechanics Icon

    Biomechanics

    Computer programs for application in Sports science, Physical Culture, among others. By Enrique R.P. Buendía Lozada. buendiaenr@gmail.com , Benemérita Universidad Autónoma de Puebla (BUAP), México. (Software without any warranty).

  • BayesRate Icon

    BayesRate

    Bayesian estimation of diversification rates

    BayesRate is a program to estimate speciation and extinction rates from dated phylogenies in a Bayesian framework. The methods are described in: Silvestro, D., Schnitzler, J. and Zizka, G. (2011) A Bayesian framework to estimate diversification rates and their variation through time and space. BMC Evolutionary Biology, 11, 311 Silvestro D., Zizka G. & Schulte K. (2014) Disentangling the effects of key innovations on the diversification of Bromelioideae (Bromeliaceae). Evolution, 68, 163-175.

  • R packages (maintained by YJLEE) Icon

    R packages (maintained by YJLEE)

    R packages for PK/PD modeling, BE/BA, drug stability, ivivc, etc.

    These R packages are developed for data analysis of PK/PD modeling, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM). They include bear, ivivc, PKfit, stab and tdm.

  • Upgrade Your Phone Service with Jive Voice Upgrade Your Phone Service with Jive Voice Icon
    Upgrade Your Phone Service with Jive Voice Icon

    Get reliable and Enterprise-Grade Communication

    • Get your first month free
    • No fees for upgrades, features or add-ons
    • Very simple to use for admins and users
  • libirt

    The new site is at http://psychometricon.net/libirt/

    The new site is at http://psychometricon.net/libirt/ Library of functions to estimate the items and abilities from the responses of subjects to a questionnaire. The IRT models supported are the logistic model, the multivariate logistic model, the graded model and smoothing by penalization and kernel.

    Downloads: 38 This Week Last Update: See Project
  • fourSig

    Analyze 4C-seq data.

    fourSig is a suite of programs for analyzing and visualizing 4C-seq data.

    Downloads: 0 This Week Last Update: See Project
  • Mass-Up Icon

    Mass-Up

    MALDI-TOF data analysis tool

    Mass-Up is an Open-Source mass spectrometry utility for proteomics designed to support the preprocessing and analysis of MALDI-TOF mass spectrometry data. Mass-Up includes several tools and operations to load, preprocess and analyze MALDI-TOF data.

    Downloads: 0 This Week Last Update: See Project
  • OpenM++

    OpenM++: open source microsimulation platform

    OpenM++ is an open source microsimulation platform inspired by and compatible with Modgen. OpenM++, compared to its closed source predecessor Modgen, has advantages like portability, scalability and open source. It is not a copy of Modgen, but a new, functionally equivalent implementation of the publicly available language specification.

    Downloads: 4 This Week Last Update: See Project
  • Hyperspectral data analysis in R

    Handling and basic analysis of hyperspectral data in R

    The hsdar package contains classes and functions to manage, analyse and simulate hyperspectral data. These might be either spectrometer measurements or hyperspectral images through the interface of rgdal.

    Downloads: 3 This Week Last Update: See Project
  • Maui Icon

    Maui

    Maui is the Maltcms User Interface

    Maui is the Maltcms User Interface, a rich client application for Chromatography-Mass Spectrometry and related research areas.

    Downloads: 0 This Week Last Update: See Project
  • Corbata

    CORe microBiome Analysis Tools

    Corbata is a set of statistical tools that can be used to analyze the core microbiome across a set of samples.

    Downloads: 0 This Week Last Update: See Project
  • Community Detection Modularity Suite Icon

    Community Detection Modularity Suite

    Suite of community detection algorithms based on Modularity

    - MixtureModel_v1r1: overlapping community algorithm [3], which includes novel partition density and fuzzy modularity metrics. - OpenMP versions of algorithms in [1] are available to download. - Main suite containing three community detection algorithms based on the Modularity measure containing: Geodesic and Random Walk edge Betweenness [1] and Spectral Modularity [2]. Collaborator: Theologos Kotsos. [1] M. Newman & M. Girvan, Physical Review, E 69 (026113), 2004. [2] M. Newman, Physical Review E, 74(3):036104, 2006. [3] B. Ball et al, An efficient and principled method for detecting communities in networks, 2011. The suite is based upon the fast community algorithm implemented by Aaron Clauset <aaron@cs.unm.edu>, Chris Moore, Mark Newman, and the R IGraph library Copyright (C) 2007 Gabor Csardi <csardi@rmki.kfki.hu>. It also makes of the classes available from Numerical Recipies 3rd Edition W. Press, S. Teukolsky, W. Vetterling, B. Flanne

    Downloads: 4 This Week Last Update: See Project
  • KMWin Icon

    KMWin

    Kaplan-Meier for Windows

    KMWin (Kaplan-Meier for Windows) is a convenient tool for graphical presentation of results from Kaplan-Meier survival time analysis. The programme is based on the statistical software environment R and provides an easy to use graphical interface. As an introduction, see http://dx.plos.org/10.1371/journal.pone.0038960#s2.

  • MoCObench

    Benchmark instances for multiobjective combinatorial optimization

    Benchmark instances for multiobjective combinatorial optimization

    Downloads: 0 This Week Last Update: See Project
  • COHCAP

    City of Hope CpG Island Analysis Pipeline

    COHCAP (City of Hope CpG Island Analysis Pipeline) is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). It provides QC metrics, differential methylation for CpG Sites, differential methylation for CpG Islands, integration with gene expression data, and visualization of methylation values. Please note: 1) The standalone version of COHCAP is no longer being updated. Please see the Bioconductor version: http://bioconductor.org/packages/release/bioc/html/COHCAP.html 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Bioconductor Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download

    Downloads: 2 This Week Last Update: See Project
  • BD-Func

    Bidirectional Functional Enrichment of Gene Expression Data

    BD-Func is an algorithm to predict activation or inhibition of pathways based upon gene expression patterns. If you use BD-Func, please cite: Warden C, Kanaya N, Chen S, and Yuan Y-C. (2013) BD-Func: A Streamlined Algorithm for Predicting Activation and Inhibition of Pathways. peerJ, 1:e159

    Downloads: 0 This Week Last Update: See Project
  • Downloads: 0 This Week Last Update: See Project
  • iramuteq Icon

    iramuteq

    IRAMUTEQ : Interface de R pour les Analyses Multidimensionnelles de Textes et de Questionnaires. Logiciel de traitement de données pour des corpus texte ou de type individus/caractères. Permet notamment de réaliser des analyses de type "ALCESTE"

  • metRology

    An R package for metrology. metRology provides classes and calculation and plotting functions for metrology applications, including measurement uncertainty estimation and (eventually) inter-laboratory metrology comparison studies.

    Downloads: 2 This Week Last Update: See Project
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