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Top Apps

  • Monitor Your Most Critical Cloud & SaaS Applications Monitor Your Most Critical Cloud & SaaS Applications Icon
    Monitor Your Most Critical Cloud & SaaS Applications Icon

    Get insights into the performance of applications and services such as AWS, Salesforce, Office 365 and WebEx.

    With a view into both web and network health, you'll be able to pinpoint the cause of an outage instantly, whether it's within your network, a provider's network or the SaaS application. Save time, track SLAs and clear tickets faster.
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  • Microsoft Office 365 monitoring simplified Microsoft Office 365 monitoring simplified Icon
    Microsoft Office 365 monitoring simplified Icon

    Monitor your Office 365® (O365) Exchange™ mailboxes and system applications with the SolarWinds® Server & Application Monitor unified platform.

    SolarWinds Server & Application Monitor allows you to monitor your hybrid IT applications and systems. Monitor Microsoft® Office 365 Exchange side by side on your on-premises Exchange server and other applications. Check, track, and report on O365 user/shared mailbox growth, users over quota, archived mailboxes, inactive mailboxes, mobile device, mailbox groups, and more. You can also monitor Microsoft portal access to help ensure you’re meeting your SLAs.
  • Cell-ID

    Toolchain for quantification of fluorescence intensity and morphological parameters in single cells using microscope based cytometry.

  • RKWard - GUI for R

    ##### RKWard has moved! ##### Find the most recent news and downloads at . RKWard aims to provide an easily extensible, easy to use IDE/GUI for R. RKWard tries to combine the power of the R-language with the (relative) ease of use of commercial statistics tools.

  • RawGeno

    RawGeno Version 2.0-1 is released! RawGeno is an R CRAN library automating the scoring of AFLP electropherograms. The library includes a graphical user interface to simplify its use. Note that the 2.0-1 version is delivered as a source (*.tar.gz for Linux and Mac users) and as a binary file (*.zip, for Windows users). The installation procedure differs slightly according to your system; but this should remain simple. Have a look at the readme file when you download your new copy from Make also sure to have a look at where you can find a detailed manual, demo datasets and many demo scripts.

  • TXM Icon


    Unicode-XML-TEI text/corpus analysis platform

    TXM is a free and open-source cross-platform Unicode & XML based text/corpus analysis environment and graphical client, supporting Windows, Linux and Mac OS X. It can also be used online as a J2EE standard compliant web portal (GWT based) with access control built in. DOWNLOAD LATEST VERSION OF TXM : TXM offers a comprehensive range of analysis tools (concordances, collocate search, frequency lists, etc.) based on the powerfull CQP full text search engine ( and a range of statistical functions (factorial analysis, classification, cooccurrency analysis, etc.) based on R packages ( Read the scientific background at the Textométrie project web site Read a full description at the TEI Tools wiki

  • Qair (for r-cran)

    a R package. 'Qair' gives access to data bases used by air quality monitoring associations in France. It also contains functions to manipualte air quality datas.

  • Communicate & Connect with Ring Central's VoIP Solution Communicate & Connect with Ring Central's VoIP Solution Icon
    Communicate & Connect with Ring Central's VoIP Solution Icon

    Cloud Powered Business Phone System

    • Unrivaled value & reliability in one solution
    • Unlimited Calls/SMS/Conferencing/Fax
    • Trusted by 350,000+ Businesses
  • colonyzer image analysis software

    Image analysis estimating cell density in arrayed microbial cultures

    Image analysis software for quantification of cell density in microbial cultures (e.g. S. cerevisiae) growing on solid agar plates. Specialises in detection of extremely low cell densities. Forms part of the Quantitative Fitness Analysis (QFA) workflow: Suitable for high-throughput, genome-wide analysis of culture libraries when combined with the following qfa R package: This is the version presented, used and demonstrated in the following manuscripts: Lawless et al. 2010 Addinall et al. 2011 Chang et al. 2011 Banks et al. 2012 Development has been moved to github, where Colonyzer has undergone several recent improvements, particuarly making installation easier and analysis faster:

  • Flow Cytometry Data Standards

    We are developing data standards and software tools that implement these standards to develop a systemic approach to modeling, capturing, analyzing and disseminating flow cytometry data.

  • NppToR: R in Notepad++ Icon

    NppToR: R in Notepad++

    NppToR provides R auto-completion and code passing between Notepad++ a

    Similar to the windows R gui built in editor, NppToR aims to extend the functionality of code passing to the Notepad++ code editor. In addition to passing to the R gui, NppToR provides optional passing to a PuTTY window for passing to an R instance a remote machine. Easy shortcuts are also provided for easy batch execution, with a monitor for longer running scripts.

  • clusterCons Icon


    An R package implementation of a consensus clustering methodology. This package allows users to perform re-sampling statistics based clustering using multiple clustering algorithms to assess the robustness of both clusters and members of clusters.

  • HRMdae

    This package, for R environment, detects DAE peaks ratio on data gotten from LightCycler instrument.

  • ManageEngine now lets you patch computers from cloud ManageEngine now lets you patch computers from cloud Icon
    ManageEngine now lets you patch computers from cloud Icon

    ManageEngine Patch Manager Plus offers patching capabilities on cloud - Patch all OS updates and 550 third party apps on-demand and stay secure!

    Last year saw the hackers unleash their expertise in skills for a ransom - targeting those unpatched computers in data-critical institutions. Only if the computers were patched on time, billions of dollars could have been saved. ManageEngine’s Patch Manager Plus comes to your rescue, offering you an automated patching solution, now on cloud, for latest hotfixes of Windows updates and a wide range of third-party applications (over 550 of them).
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    Patch on cloud now

    ANDES. This is a library and a set of applications that can be used to analyze the results of deep sequencing results. (See Li et al.: ANDES: Statistical tools for the ANalyses of DEep Sequencing. BMC Research Notes 2010 3:199.)

  • PheMaDB (Phenotype Microarray DataBase)

    PheMaDB is a web-based data management system to store and analyze OmniLog Phenotype Microarray data. The manuscript can be accessed here: Chang WE et al. BMC Bioinformatics. 2011 Apr 20;12(1):109.

  • Insilicos Cloud Army

    Platform for parallel computation in the Amazon cloud, including machine learning ensembles written in R for computational biology and other areas of scientific research. Home to MR-Tandem, a hadoop-enabled fork of X!Tandem peptide search engine.

  • RDXplorer

    The RDXplorer is a computational tool for copy number variants (CNV) detection in whole human genome sequence data using read depth (RD) coverage. CNV detection is based on the Event-Wise Testing (EWT) algorithm recently published by our group.

  • BODE: Bioinformatics ODds and Ends Icon

    BODE: Bioinformatics ODds and Ends

    A collection of bioinformatics-related software created by members of Cancer Research UK (possibly among others).

  • Oce, an R package for oceanographers

    Oce, an R package for oceanographic analysis, has moved to github, at

  • dynamo

    DynaMo (Dynamic Models) is a package for simulation, estimation, inference, regularization and prediction of time series models, with a special focus on the families of models used in Financial Econometrics.

  • Bio7 Icon


    The application Bio7 is an integrated development environment for ecological modelling and contains powerful tools for model creation, scientific image analysis and statistical analysis. The application itself is based on an RCP-Eclipse-Environment (Rich-Client-Platform) which offers a huge flexibility in configuration and extensibility because of its plug-in structure and the possibility of customization.

  • Vennerable

    An R package for the display of Venn diagrams

  • CanReg5 (moved to Github) Icon

    CanReg5 (moved to Github)

    Canreg5 is a software package for population based cancer registries

    Cancer registries need a tool to input, store, check and analyse their data. If these data are also coded and verified in a standard way, it facilitates the production of comparable analyses across registry populations. The main goal of the CanReg5 project is to provide a flexible and easy to use tool to accomplish these objectives. CanReg5 is a multi user, multi platform, open source tool to input, store, check and analyse cancer registry data. It has modules to do: data entry, quality control, consistency checks and basic analysis of the data It was designed with an emphasis on user friendliness, it has a modern user interface and is easy to navigate. Is available in several languages. (English, French, Spanish, Portuguese, Russian, Turkish, Georgian, and Chinese.)

  • Biomechanics Icon


    Computer programs for application in Sports science, Physical Culture, among others. By Enrique R.P. Buendía Lozada. , Benemérita Universidad Autónoma de Puebla (BUAP), México. (Software without any warranty).

  • AW-clust

    AWclust is easy to use non-parametric population structure analysis software written for R with a GUI interface. Just point and click and you will be on your way to discovering the important cluster information in your SNP data sets.

  • ichthyoanalysis

    R package for analysis of ichthyoplanckton data. Please visit the ichthyoanalysis WIKI for more information and for collaboration

  • FLR

    A library of R packages for use in fisheries modelling, including the evaluation of management strategies and stock assessment.

  • R packages (maintained by YJLEE) Icon

    R packages (maintained by YJLEE)

    R packages for PK/PD modeling, BE/BA, drug stability, ivivc, etc.

    These R packages are developed for data analysis of PK/PD modeling, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM). They include bear, ivivc, PKfit, stab and tdm.

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