XML text markup for ancient documents
The EpiDoc Collaborative is developing specifications and tools for standards-based, digital publication and interchange of scholarly and educational editions of documentary and literary texts like inscriptions and papyri. The link below will take you to the EpiDoc home page on this site.
Space Science library for Python - contains superposed epoch classes, drift shell tracing, access to magnetic field models, streamline tracing, bootstrap confidence limits, time and coordinate conversions, etc.
Dynamic Python binding for Qt Applications
PythonQt is a dynamic and lightweight script binding of the Qt framework to the Python language. It can be easily embedded into Qt applications and makes any QObject derived object scriptable via Python without the need of wrapper code generation.
Mnemosyne resembles a traditional flash-card program but with an important twist: it uses a sophisticated algorithm to schedule the best time for a card to come up for review.
Open source, cross-platform compositing software
Natron is an open-source, cross-platform nodal compositing software.
generateDS.py generates Python data structures from an Xschema document. It generates a file containing: (1) a Python class for each element definition and (2) parsers (using Python lxml) for XML documents that satisfy the Xschema document.
A novel transcription factor complex prediction algorithm.
Eukaryotic gene expression is controlled through molecular logic circuits that combine regulatory signals of many different factors. Complexation of transcription factors and other regulatory proteins is a prevailing and highly conserved mechanism of signal integration within critical regulatory pathways and enable to infer controlled genes as well as the exerted regulatory mechanism. We developed DACO (domain-aware cohesiveness optimization), a novel algorithm that combines protein-protein interaction networks and domain-domain interaction networks with the cluster-quality metric cohesiveness. The metric is locally maximized on the holistic level of protein interactions while sophisticated connectivity constraints on the domain level are utilized to account for the exclusive and thus inherently combinatorial nature of the interactions within such assemblies. The original publication can be found on http://bioinformatics.oxfordjournals.org/content/30/17/i415 .
PhotoFilmStrip creates movies out of your pictures in just 3 steps. First select your photos, customize the motion path and render the video. There are several output possibilities for VCD, SVCD, DVD up to FULL-HD. Creates animated slideshows.
Air traffic control tower and radar simulator (solo + multi-player)
ATC-pie is an air traffic control tower and radar simulation program. It features solo sessions, multi-player games through FGMS, and teacher-student tutorial connections. It is essentially designed for realism, and simulates real-life ATC tasks such as strip rack and sequence management, handovers to/from neighbouring controllers, transponder identification, flight plan filing, ATIS recording. It renders 3d tower views of the airport scene using FlightGear.
Blind Chess using Taiwan rule
Blind Chess also known as "Dark Chess" (暗棋) or "Banqi" or Half Chess , is a two-player Chinese board game played on a 4x8 grid, or half of the xiangqi (Chinese Chess) board. This application is using Taiwan rule. AI is using basic minimax tree structure and some rules. Advanced algorithm such as Alpha-Beta Pruning, Upper Confidence bounds applied to Trees and Monte Carlo Tree Search are NOT used. This app is single player vs computer only. For English user, Christakis Giorgios made Software Requirements Specification(pdf file), it will help anyone that downloads this application to understand basic blind chess and use it. You can download this pdf in Files->Specification folder. 2017/12/9, github repository import from this.
The CILogon project facilitates secure access to Cyberinfrastructure (CI) via the community-driven development and support of the MyProxy, GridShib, and GSI-OpenSSH software.
Note: Update folder is for beta pre-1.0.0 updates only, to download download the entire repository from gitlab.
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation.
NoOra is a database deployment tool which can be used to automate the database deployment cycle and is designed for agile and or devops teams. The supported database platforms are Oracle and Mysql. The support for Postgresql is work in progress. Feedback is more then welcome.
Assorted projects. General-purpose libraries for Python, C++, Scala, bash, and others. Meta-programming tools. System utilities. UI components. Web APIs. Configuration files. Benchmarks. Programming competition entries. And much more.
Quality Assessment Tool for Genome Assemblies
QUAST performs fast and convenient quality evaluation and comparison of genome assemblies. QUAST computes a number of well-known metrics, including contig accuracy, number of genes discovered, N50, and others, as well as introducing new ones, like NA50 (see details in the paper and in the manual). A comprehensive analysis results in summary tables (in plain text, tab-separated and LaTeX formats) and colorful plots. The tool also produces web-based reports condensing all information in one easy to navigate file. QUAST has an intuitive command-line interface and a detailed manual to help users run it and understand its output. Furthermore, the Lab started a Beta version of web-QUAST at http://quast.bioinf.spbau.ru/ which makes quality evaluation even more simple. QUAST and MetaQUAST (extension for metagenomic assemblies) papers were published in Bioinformatics.
Scientific Visualisation Made Easy
The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with graphical user interfaces and/or via the command-line. See our YouTube channel for tutorial videos via the homepage. The applications are all built out of a uniform user-interface framework that provides a very high level (Qt) interface to powerful image processing and scientific visualisation algorithms from the Insight Toolkit (ITK) and Visualisation Toolkit (VTK). The framework allows one to build stand-alone medical imaging applications quickly and easily.
Python library for creating and displaying "social" activity streams.
Library provides capabilities for: - Connecting users and things (i.e., "following" and "watching") - Creating activities (activities are events that will appear in the activity stream) - Aggregation (creating a personalized activity stream for a user, based on that user's social network) - Persistence via MongoDB
Common stuff for Imprudence and Kokua open source metaverse viewers.
The Imprudence and Kokua open source metaverse viewers are developed by Team Purple. This project is for the common stuff that is shared between the two viewers.
PyTom is a toolbox developed for interpreting cryo electron tomography data. All steps from reconstruction, localization, alignment and classification are covered with standard and improved methods. Please sign up to our mailing list to keep up with the most recent updates and versions.
GNU Health - The Free Hospital and Health Information System
GNU Health is the award-winning Free Hospital and Health Information System (HIS). GNU Health is the Hospital Information System by the United Nations .- International Institute for Global Health. GNU Health was chosen by Richard Stallman to be included in the GNU System, from the Free Software Foundation. GNU Health is brought to you by GNU Solidario, an Non-Profit Organization (NGO) that delivers Health and Education with Free Software.
Python scripts for personal use in Blender
the simplest & fastest video cutter & joiner
A modern, simple to use, constantly evolving and hella fast MEDIA CUTTER + JOINER w/ frame-accurate SmartCut technology + Qt5, libmpv, FFmpeg and MediaInfo powering the backend.
A Preferred Stock search and evaluation application which utilizes data from both QuantumOnline.com and Yahoo.com to present accurate, current preferred stock information.
Elasticsearch file system crawler and storage analytics
diskover is a file system analytics application that includes a multi-threaded disk crawler that uses Elasticsearch to index your file metadata. diskover crawls and indexes your files on a local computer or remote server using NFS or SMB. diskover helps manage your storage by identifying old and unused files and give better insights into data change "hotfiles", file duplication "dupes" and wasted space. It is designed to help deal with managing large amounts of data growth and provide detailed storage analytics. See GitHub for requirements and instructions on installing.