Source Navigator NG is a source code analysis tool. With it, you can edit your source code, display relationships between classes and functions and members, and display call trees. You can navigate your source code and easily get to declarations or implementations of functions, variables and macros (commonly called "symbols") which helps you discovering and mapping unknown source code for enhancement or maintenance tasks.
APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://www.poissonboltzmann.org/>. Please register at http://goo.gl/LGVU5j before downloading!
Weak signal ham radio communication
The WSJT project currently includes five programs designed for amateur radio communication using state of the art digital techniques. Typical applications include meteor scatter, EME ("moonbounce"), and QRP communication at HF. Summary Program Descriptions: WSJT: Modes JTMS, FSK441, ISCAT, JT6M, JT65, JT4, Echo, CW. Optimized for meteor scanner, ionospheric scatter, and EME at VHF/UHF/Microwaves. WSJT-X: Modes JT65, JT9. Primarily for use at HF. MAP65: For EME an VHF and higher frequencies. Implements a panoramic, polarization-matching receiver for JT65. WSPR: Probe potential propagation paths using low-power transmissions. WSPR-X: Experimental version of WSPR, including the slow mode WSPR-15. Source code is maintained here SourceForge. For installable end-user packages please go to the WSJT web site at the link below.
A full featured cross-platform image library
Developer's Image Library (DevIL) is a cross-platform image library utilizing a simple syntax to load, save, convert, manipulate, filter and display a variety of images with ease.
GeographicLib is a small set of C++ classes for converting between geographic, UTM, UPS, MGRS, and geocentric coordinates, for gravity (e.g., EGM2008), geoid, and geomagnetic field (e.g., WMM2010) calculations, and for solving geodesic problems. For documentation, visit https://geographiclib.sf.io
Data Analysis, Simulations and Visualization on the Sphere
Software for pixelization, hierarchical indexation, synthesis, analysis, and visualization of data on the sphere. Please acknowledge HEALPix by quoting the web page http://healpix.sourceforge.net and publication: K.M. Gorski et al., 2005, Ap.J., 622, p.759 Full software documentation available at http://healpix.sf.net/documentation.php Wiki Pages: https://sourceforge.net/p/healpix/wiki/Home GDL users should read https://sourceforge.net/p/healpix/wiki/HEALPix%20and%20GDL/
Ultrascale Visualization Climate Data Analysis Tools
Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT), is a powerful and complete front-end to a rich set of visual-data exploration and analysis capabilities well suited for climate-data analysis problems.
Cross-platform, scientific graphics plotting library
PLplot is a cross-platform, scientific graphics plotting library that supports math symbols and human languages (via UTF-8 user input strings); plot capabilities for multiple non-interactive plot file formats and in multiple interactive environments; and bindings for multiple computer languages.
MRCWA - Multilayer Rigorous Coupled Wave Analysis is a fast, flexible optical grating solver. It calculates an exact solution to the Maxwell equations for the diffraction of light from an optical grating with arbitrary profile and materials.
ffnet is a fast and easy-to-use feed-forward neural network training solution for python. Many nice features are implemented: arbitrary network connectivity, automatic data normalization, very efficient training tools, network export to fortran code. Now ffnet has also a GUI called ffnetui.
This will be a place to release tools that have not yet been added to SciPy (or will not be added for whatever reason). Currently an interface to ImageMagick is here.
Unix Tools For Windows
CodeBlocks With A full development environment. Took a while but CodeBlocks is now upto speed and in sync with the current release version. New version of CodeBlocks supports XML based configuration, so users can do specialized compiler support if needed. Changed away from the old Msys in favor of Msys2 which has better support for a lot of things like miktex. Old package is still there if you still need it but wont be developed on anymore. Loads of modifications compared to the Msys2 package from Alex, you can still update Msys2 packages from his server though. MinGW64 packages have to many changes compared to Alex version so those will not upgrade but im working on creating my own package server. Current Msys2/MinGW64 gcc is now 6.2.0-4 and binutils 2.27. New packages will be uploaded shortly. Stay tuned for more changes.
PySCeS is the Python Simulator of Cellular Systems
PySCeS is the Python Simulator of Cellular Systems. For a network of coupled reactions it does a stoichiometric matrix analysis, calculates the time course and steady state, and does a complete control analysis.
WARNING: Project moved to http://github.com/scemama/irpf90 IRPF90 is a Fortran90 preprocessor written in Python for programming using the Implicit Reference to Parameters (IRP) method. It simplifies the development of large fortran codes in the field of scientific high performance computing.
BlockIt provides a Python framework to scan and parse a program file into constituent nested blocks, however defined, forming a block tree of your code and can be used as a mechanism to "extend" in some sense, the underlying programming language.
Advanced numerical instruments: adaptive meshing, FE methods, solvers
Ani2D provides portable libraries for each step in the numerical solution of systems of PDEs with variable tensorial coefficients: (1) unstructured adaptive mesh generation, (2) metric-based mesh adaptation, (3) finite element discretization and interpolation, (4) algebraic solvers.
finFoil is an application to help amateur surfboard fin makers foil their fins properly. Check out the homepage for the latest news and tutorials: http://hrobeers.github.io/finFoil/ hrobeers
Simple Python class for managing tables of data in memory using NumPy. It allows to give names to views of array. The package contains few classes built on top of the basic one to be used as post processing tools for particle optics computations.
Cca-forum unifies the Common Component Architecture tools and tutorial. It includes the CCA specifications, the Ccaffeine framework for HPC, and related tools. These support multilanguage scientific and parallel computing.
VulaSHAKA (Simultaneous Neutronic, Fuel Performance, Heat And Kinetics Analysis)
This application is intended to be a tool for easy, almost automatic, creation and calculation of gear transmission finite element models. It consists of a geometry and mesh generator based on GMSH and a finite element model based on GETFEM++.
BrennerMD is a public domain Fortran molecular dynamics program by Donald Brenner and other people. This project is to maintain the original source code and to build a Python interface on top of it.
Visit [http://www.gmfg.buffalo.edu] GMFG website for More information. A user guide for TITAN is made available on GMFG website. We strongly recommend all the users to register with GMFG website for future updates
Engineering, analysis and computing tools for marine and coastal science and technology
FortWrap is a python script that parses Fortran 90/95/200X source files and generates wrapper code in the form of C++ classes. FortWrap is intended to be used with object oriented Fortran code that makes use of Fortran derived types. Project has moved to: https://github.com/mcfarljm/fortwrap