APBS is a software package for the numerical solution of the Poisson-Boltzmann equation, a popular continuum model for describing electrostatic interactions between molecular solutes over a wide range of length scales. <http://www.poissonboltzmann.org/>. Please register at http://goo.gl/LGVU5j before downloading!
Virtual Image containing the ARMNLIB development environment and the GEM model from the Meteorological Research Division of the Canadian Meteorological Centre.
AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.
Advanced numerical instruments: adaptive meshing, FE methods, solvers
Ani2D provides portable libraries for each step in the numerical solution of systems of PDEs with variable tensorial coefficients: (1) unstructured adaptive mesh generation, (2) metric-based mesh adaptation, (3) finite element discretization and interpolation, (4) algebraic solvers.
AquaTerm is a Mac OS X grahics renderer. It allows command line applications written in ObjC, C, FORTRAN, Lisp, Perl or Python to display vector graphics, text and images using a simple API. Adapters for gnuplot, PGPLOT, and PLplot exists as well.
The aim of this project is to translate the geostatistical BMELib Matlab Toolbox (http://www.unc.edu/depts/case/BMELIB/) into Python.
BlockIt provides a Python framework to scan and parse a program file into constituent nested blocks, however defined, forming a block tree of your code and can be used as a mechanism to "extend" in some sense, the underlying programming language.
BrennerMD is a public domain Fortran molecular dynamics program by Donald Brenner and other people. This project is to maintain the original source code and to build a Python interface on top of it.
ByoDyn (http://cbbl.imim.es/ByoDyn) is a software tool for the study of biochemical networks within the framework of systems biology. SBML compatible, ByoDyn is a group effort of the Computational Biochemistry and Biophysics Lab.
A cross platform audio inteface
CIOS Audio Core is the infrastructure and subsystem in Collective Intelligence Operation System. It is a cross platforms audio abstract interface, supports including Mac OS X, Linux, Android, iPhone OS and Windows 7.
Cantera is a suite of object-oriented software tools for problems involving chemical kinetics, thermodynamics, and/or transport processes. It can be used from MATLAB, Python, C++, or Fortran.
Ultrascale Visualization Climate Data Analysis Tools
Ultrascale Visualization Climate Data Analysis Tools (UV-CDAT), is a powerful and complete front-end to a rich set of visual-data exploration and analysis capabilities well suited for climate-data analysis problems.
An extension of Code_Aster to add multilingual support to it's varying GUI interfaces included in the default package. Eventually, we also intend to extend Code_Aster by contributing command file templates and extending the analysis abilities.
Code_Aster Windows is the Windows port of the OpenSource FEM solver Code_Aster (www.code-aster.org).
COmputational fluid dyNamics STRUctured grid CreaTor for 2D airfoils
Construct2D is a grid generator designed to create 2D grids for CFD computations on airfoils. The grids are generated in Plot3D format. The only required input file is the set of coordinates defining the airfoil geometry, using the same format as XFoil, the popular vortex-panel code for airfoil analysis. Construct2D can create grids with O topology (recommended for airfoils with a blunt trailing edge) or C topology (recommended for airfoils with a sharp trailing edge). Now available in version 2.0: hyperbolic grid generation to create higher quality grids in a fraction of the time compared to elliptic grid generation. Elliptic grid generation is still available also. Smooth airfoil surface spacing is handled automatically with user-controlled clustering parameters. Also included is a visualizer written in Python with matplotlib.
2D Frame Analysis, Linear Static Analysis, Mode Shapes
This is a free program for solving linear 2D framed structures under static loading and calculating the mode shapes. It is coupled with an easy-to-use GUI that provides the possibility to design the structure very fast. It calculates reaction forces, diagrams of axial and shear forces, as well as, diagrams of bending moments. Moreover, it calculates the mode shapes of the structure using various methods and it will be cabable of performing dynamic analysis soon. The program is written in FORTRAN90 and the GUI in Python. At the moment it is available only in 64bit version for windows.
Pre-Alpha Console distro for high performance Linux computing.
Basic Debian INTEL/AMD HPC console/desktop multi purpose. Linux for software devs/QA and thin laboratory clusters. MIC hardware, NUMA and live network memory and full IPv6 are supported. Final alpha release features: ======== * Usb image * General debian repos * VM optimizations * Hugepages by default * CGROUPs optimized by default * ALSA * Latest Debugging / Baremetal kernels * Full Haswell and MIC support in test * Full optimized python support * Full optimized perl support * Java compliance * IPv6 full stack with IPsets * Multipath storage * Overclocking tools * Student/Developer scripts. (git pull, builders) * i915 latest support drivers and gallium. * Kernel patching, testing featurettes * Wi-Fi and bluetooth ipv4 support * Latest GCC versions * Qt, Java, Maven, Desktop improvements Notes ==== Basic Console Pre-alpha build Test and rate for improvemen
A full featured cross-platform image library
Developer's Image Library (DevIL) is a cross-platform image library utilizing a simple syntax to load, save, convert, manipulate, filter and display a variety of images with ease.
Approximate solvation free energy calculator
ERmod (Energy Representation Module) is a program to calculate the solvation free energy based on the energy representation method (J. Chem. Phys. 113, 6070 (2000)). The program allows users to calculate the solvation free energy to arbitrary solvents, including inhomogeneous systems, and can run in cooperation with state-of-art molecular simulation softwares, such as NAMD, GROMACS and/or AMBER.
The Easy Fortran I/O library generator
The epler project's main intention is to provide a library with bindings to C++, and eventually C, Python and Fortran for manipulating, analyzing and visualizing large datasets. Building frontends on top of this isolated library is also planned.
Famms is a Python module for applying the method of manufactured solutions (MMS) to PDE simulators written in C/C++, Fortran, and Python.
ffnet is a fast and easy-to-use feed-forward neural network training solution for python. Many nice features are implemented: arbitrary network connectivity, automatic data normalization, very efficient training tools, network export to fortran code. Now ffnet has also a GUI called ffnetui.
InLine Plot with Fortran
This is a Fortran Module that merges the performance of the computation of the Fortran with the power of a Python Package called Matplotlib plot the data computed by your fortran code. It allows you to divide you data into groups of datafiles and each group is stored on its own directory. It allows you to create different types of plotting files such as, PNG file for each datafile and PDF and MPEG files for each group of datafiles. It works with FORMATTED and UNFORMATTED fortran datafiles. When you call the main subroutine in this module which is called FORTPLOT, it creates a python coded file that you can execute it at any time to get the plots and take a decision about continue the run or halt it. So, with multiple nodes machine you can assign a node for running the python coded file created by the Fortran code to get you data plotted.
FortWrap is a python script that parses Fortran 90/95/200X source files and generates wrapper code in the form of C++ classes. FortWrap is intended to be used with object oriented Fortran code that makes use of Fortran derived types. Project has moved to: https://github.com/mcfarljm/fortwrap