Hybrid Lineage Transcriptome Explorer
HyLiTE (Hybrid Lineage Transcriptome Explorer) analyzes high-throughput transcriptome data from allopolyploid species. Allopolyploidy describes the formation of a new hybrid organism from the union of two or more different parents. Allopolyploid species carry multiple copies of each gene (homeologs), which often exhibit unusual expression patterns. Homeolog expression levels can technically be determined from next generation sequencing data (RNA-seq), but in practice, assigning reads to one homeolog over another is extremely challenging, particularly on a whole-genome scale. HyLiTE automates this process, and allows gene expression patterns to be explored even in very complex allopolyploid species.
Software to processing and analyze of airborne measurements.
The Airborne Data Processing and Analysis (ADPAA) package is an open-source software package containing a collection of programs and scripts to process and analyze data from in-situ instruments deployed on airborne platforms. The ADPAA package was started to process data on the North Dakota Citation Research Aircraft but has been used to process data on many airborne platforms. The software methodology used in ADPAA is provided in the peer-review publication: Delene, D. J., Airborne Data Processing and Analysis Software Package, Earth Science Informatics, 4(1), 29-44, 2011, URL: http://dx.doi.org/10.1007/s12145-010-0061-4, DOI: 10.1007/s12145-010-0061-4.
Modular System for Shelves and Coasts
The Modular System for Shelves and Coasts (MOSSCO) is a coupling framework for Earth System Models. It helps users to integrate their own numerical models with other developments. Quick Start: git clone git://git.code.sf.net/p/mossco/setups mossco-setups git clone git://git.code.sf.net/p/mossco/code mossco-code cd mossco-code cat QuickStart.md or read online https://sf.net/p/mossco/code/ci/master/tree/QuickStart.md Beware: this is alpha software, expect trouble! ------------------------- Better, read the full documentation online http://www.mossco.de/doc or make it yourself make doc acroread doc/mossco_documentation.pdf ---------------------- Why MOSSCO? MOSSCO, the "Modular System for Shelves and Coasts" is a framework for coupling processes or domains that are originally developed in standalone numerical models. The software MOSSCO implements this infrastructure in the form of a library of components and couplers, and of example coupled application.
Distributed and Parallel Computing with/for Python.
dispy is a comprehensive, yet easy to use framework for creating and using compute clusters to execute computations in parallel across multiple processors in a single machine (SMP), among many machines in a cluster, grid or cloud. dispy is well suited for data parallel (SIMD) paradigm where a computation (Python function or standalone program) is evaluated with different (large) datasets independently.
Python framework to access Linux dumps programmatically from 'crash' and tools written using it
TOMUSS: The Online Multi User Simple Spreadsheet
TOMUSS is an interactive web application (groupware) allowing multiple concurrent users to edit data tables. Its primary goal is the management of students grades.
Uniform interface to computing and data resources
UNICORE is a software suite for building federated systems, providing secure and seamless access to heterogeneous resource such as compute clusters and file systems. More: www.unicore.eu
isfdb is a set of web-based bibliographic tools for displaying author, award, and publication bibliographies. It uses MySQL plus Python and contains a set of editing applications, as well as a moderated approval system. Used at www.isfdb.org.
OpenSource and DIY real electronic darts game
Play at many electronic darts game (such as Cricket, Crazy Cricket, 321 Zap, etc) with a cheap DIY dart game controled by an Arduino UNO controler, and the pyDarts python game ! Make you own game and share it with the community ! Note that this is NOT a software to manually score while you are playing beside ! This software score by itself but require a converted dart board ! pyDarts is the reference since no other electronic dart game offer so much functionalities !
open source python packages for X-ray MicroLaue Diffraction analysis
LaueTools is an open-source project for white beam Laue x-ray microdiffraction data analysis including tools in image processing, peaks searching & indexing, crystal structure solving (orientation & strain) and data & grain mapping visualisation.
Provides metadata and videos
Check and Update Products on OPSI Server
This OPSI SERVER Command line Tool (Opsi Updater) will check for available OPSI Product Updates on official Servers (example Mozilla) and will allow to Download and Update older Product Versions on OPSI Repository and distribute them on clients having older versions. readme: http://svn.code.sourceforge.net/p/opsiupdater/code-0/trunk/readme.txt
ConvertAll is yet another unit converter. But it can combine the units any way you want.
The GetData library provides an API to interface with Dirfile databases. The Dirfile database format is designed to provide a fast, simple, scalable format for storing and reading binary, synchronously-sampled, time-ordered data.
omniORB is a CORBA object request broker for C++ and Python. It is very fast, robust, and standards-compliant.
Diffraction Contrast Tomography analysis code
Diffraction contrast tomography code base, as developed by researchers from beamline ID19 of the ESRF, Grenoble, France, and Manchester University, UK.
A Full PLM system based on odoo
OdooPLM is an Open Source module for Odoo that allows you to manage PLM Data inside Odoo. You can upload data from the most common commercial CAD systems directly to Odoo Our approach, very quick, ready to use, is very useful for all companies that wants useful and powerful tools. You can install PLM module and its Client without any cost, touching the quality of our product in your real work environment. Odoo is a product of Odoo SA, world class leader in Open Source ERP system. Find it at http://www.odoo.com This project is maintained by OmniaSolutions. Find us at http://omniasolutions.website
A Python interface to the GSL library. The wrapper covers nearly everything GSL provides.
Auto Update munki products
Automatically Get Official Product Updates on munki Server. This MUNKI SERVER Command line Tool (Munki Updater) will check for available MUNKI Product Updates on official Servers (example Mozilla) and will allow to Download and Update older Product Versions on MUNKI Repository and distribute them on clients having older versions. readme: http://svn.code.sourceforge.net/p/munkiupdater/code-0/trunk/readme.txt
GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.
Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
Master/node to gather and graph "everything" on your systems using Tobi Oetiker's rrdtool. It can optionally warn your surveillance software. This software package was originally called LRRD. The project. Please see http://munin-monitoring.org/
System tray unread mail checker for Linux
CheckMails periodically looks for unread mails and displays the total number of unread mails in the system tray icon. Several mailboxes can be configured. The number of unread mails for each mailbox is detailed in a notification that appears when clicking on the icon and after a check. This application supports only IMAP protocol with SSL encryption. The connection information for each mailbox is stored in an encrypted file using a master password.
File browser for Tkinter
tkFileBrowser is an alternative to tkinter.filedialog that allows the user to select files or directories. The GUI is written with tkinter but the look is closer to GTK and the application uses GTK bookmarks (the one displayed in nautilus or thunar for instance). This filebrowser supports new directory creation and filtype filtering.