AAARF, written in PERL and with numerous adjustable parameters, identifies sequence overlaps in small shotgun sequence datasets and walks them out to create long pseudomolecules representing the most abundant repeats in a genome.
Algorithmic Based Automatic Contiguation of Shot-gun sequences (ABACAS) is an integrated platform for quickly contiguating reference based assemblies.
Algorithm Based Automatic Contiguation of Assembled sequences (ABACAS) is an integrated platform for quickly contiguating reference based assemblies.
AFELO allows to select images on your local computer, to resize, manipulate and compress them and to send them to your server with only a few clicks.
The AHN Mini Publisher is a free, light weight, easy to install news content management system for Linux, Apache, MySQL and Perl CGI. The mini-publisher news CMS is template based and allows for simplistic role based publishing of text and images.
AMPPS is a LAMP/MAMP/WAMP stack
AMPPS is a stack of Apache, MySQL, PHP, Perl & Python. AMPPS enables you to focus more on using applications rather than maintaining them. With AMPPS you can create a website by installing any of the 330+ Apps, customizing it, and then simply publishing it on the internet via a wide choice of hosting service providers. A complete package on your desktop, same like the server that provides many open source web applications. Application Management, Domain management, Database management, etc are provided in a secure environment to ease your development. Softaculous is ready for your desktops with AMPPS to boost your development. Like servers, now auto-installation is possible on your desktop too. It provides your favorite script installations by the click of a button.
Metabolic reconstruction from DNA or protein sequences.
ASGARD is software for metabolic pathway reconstruction, but it can also generate other types of biological sequence annotation (EC and GO numbers, BLAST reports). This program is intended to be run in UNIX-like systems, and supports SGE or PBS.
ASpipe is a pipeline to process GeneSeqer/GMAP alignments and identify alternative splicing (AS) events from the alignments. It requires unix bash, perl 5.0+ with DBI module and MySQL5.0+ to run properly.
The AbiWord word processor is a full-featured cross-platform word processor.
Address Actions manipulates addresses in Mac OS X 10.4 (and hopefully 10.3). Select an address in an email, webpage or other text, then choose Address Actions from the Services menu to add the address to the Mac OS X Address Book or display a map.
Basic concepts of And-Learning 1. INTRODUCTION The object of this report, is to be good as starting point for the development of a platform of and-learning whose nucleus is based in PHP-cloud. The following points are an analysis and ..
Squid Videos/Music/Images/Libraries/CDNs Booster
Improve the Performance of your Linux Squid Proxy Cache ! Advanced Caching Add-On for Linux Squid Proxy Cache for Videos, Music, Images, Libraries, CDNs, etc... By default your existing Squid Cache cannot properly cache most popular multi-media websites like YouTube, Facebook, DailyMotion, Vimeo, Vevo, Google Maps & Apps, Apple, Tumblr, Yandex, etc... Now there is a quick and easy solution and within 5 minutes you can load this Squid add-on to significantly improve the caching possibilities and performance of your Squid Cache. More than 800+ websites are already supported and can be cached automatically in order to get the best out of your existing Internet bandwidth. List of all supported web sites: http://www.unveiltech.com/videosboost.php SquidVideoBooster works with Squid 2.7, 3.4, 3.5, 4.x and 5.x. You will immediately save money and satisfy your users who will enjoy a better Internet experience. Try our free 30 days trial version and see the performance.
Affelio is open-source social networking software / architecture. It has following features: (1)distributed architecture (2)Internet-wide scalability, (3)Extensivity with opened Affelio API for developers, and (4)high custamizability with skins/templates
A fast, unobtrusive and modern cross-platform GUI toolkit. Agar fully exploits hardware acceleration where available, but also supports simple frame-buffer interfaces. Agar is stand-alone and easily portable to new platforms and graphics systems.
A self-contained rule development and testing environment for agate translations for DTI's WireSpeed system.
A cli based AIM client that allows you to chat from any terminal on a system.
Open Source SIEM
OSSIM, AlienVault’s Open Source Security Information and Event Management (SIEM) product, provides event collection, normalization and correlation. For more advanced functionality, AlienVault Unified Security Management (USM) builds on OSSIM with these additional capabilities: * Log management * Advanced threat detection with a continuously updated library of pre-built correlation rules * Actionable threat intelligence updates from AlienVault Labs Security Research Team * Rich analytics dashboards and data visualization
Alist is a program that collects hardware and software information about systems and stores it in a database for users to browse and search via a Web interface. The program consists of three parts: a client portion that collects the information, a daemon
A pipeline to define allele-specific genomic features
Detecting allelic biases from high-throughput sequencing data requires an approach that maximises sensitivity while minimizing false positives. Here we present Allelome.PRO, an automated userfriendly bioinformatics pipeline, which uses high-throughput sequencing data from reciprocal crosses of two genetically distinct mouse strains to detect allele-specific expression and chromatin modifications. Allelome.PRO extends approaches used in previous studies that exclusively analysed imprinted expression to give a complete picture of the “allelome” by automatically categorising the allelic expression of all genes in a given cell type into imprinted, strain-biased biallelic or noninformative. Allelome.PRO offers increased sensitivity to analyse lowly expressed transcripts, together with a robust false discovery rate empirically calculated from variation in the sequencing data.
AlphaMail is an accelerated web mail interface with a C++ middleware layer that is more effective than an IMAP proxy which is a highly scalable (10k+ users). The interface includes modern features, Section 508 compliance, and universal browser support.
Andutteye is an open source systems management platform that automates enterprise data centers and keeps them running. With Andutteye you can control your Linux and Unix system from a central point of operation.
Anti-Spam SMTP Proxy Server implements multiple spam filters
The Anti-Spam SMTP Proxy (ASSP) Server project aims to create an open source platform-independent SMTP Proxy server which implements auto-whitelists, self learning Hidden-Markov-Model and/or Bayesian, Greylisting, DNSBL, DNSWL, URIBL, SPF, SRS, Backscatter, Virus scanning, attachment blocking, Senderbase and multiple other filter methods. Click 'Files' to download the professional version 2.6.1 build 17355. An linux and a freeBSD based OVA of ASSP V2 are also available for download. NOTICE: V1 development has been stopped at the end of 2014 (1.10.1 build 16060). Possibly there will be done some bugfixing in future. Please upgrade to V2, which is and will be actively maintained.
Web-based password and group file manager for Apache in Perl
In combination with the Apache web server and mod_perl, Apache::MP3 lets you create a virtual jukebox of your MP3, WAV and Ogg Vorbis music files, browse them over the web, create playlists, and stream them.
Wyrds are (X)HTML-like tags representing very flexible perl objects which can greatly simplify and speed up the development of dynamic content using Apache and mod_perl. The Apache::Wyrd modules provide the core development environment.