KGML-to-SBGN Converter converts a given KGML file to two SBGN-ML files representing SBGN PD (process description) and SBGN AF (activity flow) maps. It is coded in Perl, XQuery, and XSLT.
Lomalarga is a VPN-like service based on SSH and Linux.
Lomalarga is a port forwarding (VPN-like) service based on SSH & Linux. Based entirely on open source. The client is written in C# and the administration is based on Linux/lighttpd/PostgreSQL/PHP, with the UI written with Google Web Toolkit.
The Multi-purpose Automated Genome Project Investigation Environment (MAGPIE, http://magpie.ucalgary.ca/), is a software package for the automated curation and presentation of DNA and protein sequences. Freely available under terms of Apache license v2.0
MasonX-Foundation is an extension to MasonX-WebApp to include a simple ORM, form management, and account information.
Urban traffic timetable of (currently) two cities in Poland for mobile phones. MicroBus is a JAVA Midlet.
Distribusjon av og info om musikk
This is a service that allows you to proxy comments and acknowledgements. This is useful for allowing acknowledgements from outside your network. Right now, it only supports Nagios.
The project aims at creating an enterprise-grade PKI/Trustcenter software supporting well established components like RDBMS and Hardware Security Modules. The core components are written in Perl. OpenXPKI is released under the Apache License v2. NOTE: Development resources have moved to https://github.com/openxpki/openxpki SF Mailing Lists are still active.
PDFassassin is a module for Spamassassin which scans the content of PDF attachments against the spamassassin engine and appends the resulting spam score to the overall score of the email message.
Tool for generating patches from annotated source code.
Patchouli is a tool for easily creating and maintaining a set of source code patches, while continuing to normally edit, compile, and do version control of the project as one whole. The tool builds the patches from annotations inside the source code.
Perl modules for applications development
Colibra is an open source initiative multi language, focused primarily at developers, designers and students, who gives them a set of free use libraries for development and implementation of Web applications. Perl.Colibra is a compilation of Perl modules for applications development based on Perl 5 and integrated with jQuery.Colibra, besides of include objects that allow integration with all classes of jQuery.Colibra directly from Perl, this compilation include modules to support the processing and handling of formats data such as XML and date-time among others. All these plugins are separated into classes that can be used separately or together. These classes were built under the Development Standard of the Colibra Project, forming an integral part of this.
This project is abandoned. Download these files at your own risk. For the latest version please visit http://decafbad.net/projects/piddlepodder/ This application is a podcatching client written in Perl. It is based off of the simplicity of bashpodder with a few added features. It downloads podcasts from a list of XML feeds, and puts them into a download directory by date.
Our mission - to provide you with portable applications, or "portable apps" -- applications that you can carry around on your USB drive, iPod, and other devices. You carry all your information, settings, and programs with you!
PPFN, it is also a tool to be hidden from any server log, these developers know what they have to do. Do you? If you download this ultimate package you will be able to enjoy the web knowing that you would be safe. So be safe, learn to surf right - PPFN
REX: Remote EXecution Distributed Computing Services for Linux and Solaris, providing C and C++ APIs, librex library and "rexd" daemon software to implement Load Balancing Process Migration : Dump + Restore, Remote File and Resource Management.
Conjunto de regras em Português ou direcionadas para o tráfego SPAM no Brasil.
The Regression Result Tool (RRT) is a Perl based tool that displays regression results via a web page. It takes as input a directory/list of test log files. It parses each for pass/fail information and any other info one would like to have reported.
ReleaseWorks(R) is a suite of tools to help project teams control and automate the process of release management. Using a three stage process of Gather, Validate, and Publish, it provides a robust way of integrating user changes into the release.
SIMM: Simultaneous Identification of Multiple Mutations
SIMM (Simultaneous Identification of Multiple Mutations) pipeline provides a workflow to align the clean reads to reference genome, call SNPs between mutants and reference genome, then genotype the SNPs and identify causal mutations from different mutants simultaneously without the sequencing information of wild-type progenitor. Individuals with mutant homozygous phenotype are bulked and sequenced to >20X, and then analyzed with SIMM to identify causal mutation(s) responsible for the mutant phenotype. Correction of sites within candidate region is required when necessary. SIMM has been proved to be efficiently in identifying causal mutations in rice and Arabidopsis. It can decrease the candidate SNPs to a few sites.
The SWWE is a Static Web Widget Engine, with this library the developer can create a web application in few minutes. This library does not require the developer to know HTML. It's based on Ajax and Java Servlet. A porting for .NET and Perl is planned.
Perl modules for UNIX shell interface development
Colibra is an open source multi language initiative, focused primarily at developers, designers and students, who gives them a set of free use libraries for development and implementation of Web applications. Shell.Colibra is a compilation of Perl modules for developing Shell line command interfaces on operating systems UNIX based. This compilation could also be itegrada with Perl.Colibra, however, can operate independently. All these modules are separated into classes which in turn are separated into a core class (Colibra::Shell) and complementary classes. These classes were built under the Development Standard of the Colibra Project, forming an integral part of this.
A lot of fish in a shoal, in a gigantic scientific ocean.
Ours organization website GCModeller.org is coming online soon! Shoal Shell is the sub project for the "genome-in-code"(http://code.google.com/p/genome-in-code/) virtual cell modelling project of the bacteria Xcc 8004. Shoal Shell aim at provide the modelling tool and the debugging tool for the GCModeller virtual cell modelling, And from the extendible library package, shoal shell can manage to accomplish the entire modelling job for any other bacteria species. Shoal Shell Project needs grownup I'm just a student in the university, and the shoal shell just in its begining, if you have any idea about shoal, please contact me from email@example.com. The Shoal shell needs your professional advice. Try get some help (if you want build the shoal library by yourself): https://sourceforge.net/p/shoal/wiki/Shoal%20Developer%20Guide/
Datacenter management projects for tracking assets, network info, and job processing.
SimpyTools is a collection of various software for using, enhancing the http://simpy.com/ social bookmarking service. The software includes libraries in various programming languages, for using the REST API of simpy.com, but also a FF extension and more.