A general purpose source code indexer and cross-referencer that provides web-based browsing of source code with links to the definition and usage of any identifier. Supports multiple languages. Up-to-date information in http://lxr.sourceforge.net
Mailing List Manager - Web-based, Self-Hosted, Feature-Rich
Dada Mail is a Contemporary Mailing List Manager, enabling you to easily run a verified mailing list that your subscribers can trust, right on your own website. Dada Mail helps you with managing an email mailing list, offering complete support for safe, closed-loop opt-in subscriptions, sending out mass mailings, keeping message archives and allowing you to share your messages in lots of neat ways. You run Dada Mail on your own web hosting account, giving you complete control over your valuable mailing lists. Do It Yourself - Dada Mail is designed for small businesses in mind, to provide an economical and extremely flexible solution to reach out to your customers, fans, friends, business partners and clients. There's no monthly fee to use Dada Mail, based on sending amount or otherwise.
An application to control DIY home automation products
This Perl/PostgreSQL application enables to control various do-it-yourself home automation products (such as air conditioning units or electric radiators). The code is highly portable for used with other DB (for example MySQL). It may be used as a scheduler with light modifications. User Interface is provided by the Home Automation Control Center UI project (https://sourceforge.net/projects/climcontrolui)
SIMM: Simultaneous Identification of Multiple Mutations
SIMM (Simultaneous Identification of Multiple Mutations) pipeline provides a workflow to align the clean reads to reference genome, call SNPs between mutants and reference genome, then genotype the SNPs and identify causal mutations from different mutants simultaneously without the sequencing information of wild-type progenitor. Individuals with mutant homozygous phenotype are bulked and sequenced to >20X, and then analyzed with SIMM to identify causal mutation(s) responsible for the mutant phenotype. Correction of sites within candidate region is required when necessary. SIMM has been proved to be efficiently in identifying causal mutations in rice and Arabidopsis. It can decrease the candidate SNPs to a few sites.
Cluster administration tool
ClusterSSH controls a number of xterm windows via a single graphical console window to allow commands to be interactively run on multiple servers over an ssh connection.
An automated, Web based IP address management (IPAM) software. It features powerful search and filter functions for both networks and host, as well as many tools (e.g. a subnet calculator) helping Administrators to plan and handle complex IP networks
List packages that have no dependencies (like deborphan)
rpmorphan finds "orphaned" packages on your system (packages which have no other packages depending on their installation). A console and graphical interface is provided. It is a clone of deborphan debian software. It provides also some others rpm tools (rpmusage, rpmdep, rpmduplicates, rpmextra)
KeePass Command Line Interface
KeePass Command Line Interface (CLI) / interactive shell. Use this program to access and manage your KeePass 1.x or 2.x databases from a Unix-like command line.
Shift provides reliable high performance local/remote file transfers.
Shift is a lightweight framework for high performance local and remote file transfers that provides resiliency across a wide variety of failure scenarios through various techniques. These include end-to-end integrity via cryptographic hashes, throttling of transfers to prevent resource exhaustion, balancing transfers across resources based on load and availability, and parallelization of transfers across multiple source and destination hosts for increased redundancy and performance.
Command-line operators for netCDF and HDF files
The netCDF Operators, or NCO, are a suite of file operators which facilitate manipulation and analysis of self-describing data stored in the (freely available) netCDF and HDF formats. Volunteers welcome! See homepage for details and download links.
A universal instant messaging (IM) program
See https://pidgin.im/about/ for more information. Pidgin is an instant messaging program which lets you log in to accounts on multiple chat networks simultaneously. It runs on Windows, Linux, and other UNIX operating systems. Pidgin is compatible with the following chat networks out of the box: AIM, ICQ, Google Talk, Jabber/XMPP, MSN Messenger, Yahoo!, Bonjour, Gadu-Gadu, IRC, MXit, Novell GroupWise Messenger, Lotus Sametime, SILC, SIMPLE, MySpaceIM, and Zephyr. It is written in C and makes heavy use of GLib and GTK+. Finch is a command line instant messaging program. It also lets you log in to accounts on multiple chat network simultaneously, and it is compatible with the same chat networks as Pidgin. It is written in C and makes heavy use of GLib and ncurses.
A web-based interface for system administration of UNIX
A web-based system administration tool for Unix servers and services.
Software for storing and analysing bacterial sequence data
The Bacterial Isolate Genome Sequence Database (BIGSdb) is a scalable, web-accessible database system designed to store and analyse linked phenotypic and genotypic information in a computationally efficient manner. Sequence data can range from single sequence reads to multiple contigs generated by whole genome sequencing technologies. The system incorporates the capacity to define and identify any number of loci and genetic variants at those loci within the stored nucleotide sequences. These loci can be further organised into schemes for isolate characterisation or for evolutionary or functional analyses. See Jolley and Maiden 2010, BMC Bioinformatics 11:595 (http://www.biomedcentral.com/1471-2105/11/595). You can report bugs or make enhancement requests using the issues tracker at https://github.com/kjolley/BIGSdb. The source code is also mirrored there.
Free forum software
YaBB is a FREE Perl forum (bulletin board) system that has rivaled professional message boards for years. YaBB provides chat for visitors where they can post any time and reply to anyone!
Evidence Directed Gene Construction for Eukaryotes
EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification. All software developed for EvidentialGene is publicly available. See project wiki/blog for notes.
Collectl is a light-weight performance monitoring tool capable of reporting interactively as well as logging to disk. It reports statistics on cpu, disk, infiniband, lustre, memory, network, nfs, process, quadrics, slabs and more in easy to read format.
The home page of the Goddard Mission Services Evolution Center (GMSEC) Application Programming Interface (API).
Café is an yagte (*) multipurpose, tabbed, scriptable, lightweight, fast, UTF-8 ready and full-featured text editor with IDE aspirations. Cafe' uses Perl as macro language. (*) yet another GTK+ text editor
Source code from the Research Institute for Signals, Systems and Computational Intelligence http://fich.unl.edu.ar/sinc
Simple Event Correlator (SEC) is a lightweight event correlator for network management, log file monitoring, security management, fraud detection, and other tasks which involve event correlation.
Administration tool for Linux-based ISP traffic shaper
Administration tool for Linux-based ISP traffic shaper
**** This page is not used for this project any longer. *** Please update your bookmarks and go to https://github.com/UUPharmacometrics/PsN
The NT POSIX C Runtime Library is an IEEE standard runtime library for the NT POSIX subsystem. It can be used as a complete replacement or a side by side alternative for what is shipped with the Interix SDK.
husky is a bunch of os-independent software for fidonet. It consitsts of tosser hpt, fileechoprocessor htick, message editor msged TE, libraries fidoconfig, smapi etc. Russian documentation may be found in Wiki http://sf.net/apps/mediawiki/husky/
Afick is a fast and portable intrusion detection and integrity monitoring system, designed to work on all platform (it only needs perl and standard modules), including windows, linux, unix. The configuration syntax is very close from tripwire/aide