In addition to RPKM (Reads Per Kbp per Million reads) values, RACKJ computes read counts for exons and splicing events. In so doing, it is feasible to compare two samples and identify genes with most significant difference in exon(splicing)-level.
High performance and easy to use open source load balancer with enterprise solutions.
OPTOSS Next Gen Network Management System (NG-NetMS)
Why to pay tens of thousands $$$ for your network management software? Get visibility into your networks and complex processes inside with NG-NetMS now! NG-NetMS is a new end-to-end network management platform for your Linux servers, Cisco, Juniper, HP and Extreme routers, switches and firewalls. NG-NetMS is precise, quick and efficient. It collects most complete information about the network inventory, topology, map of IPv4 addresses quickly and with minimum hassle. Most important you will be able to collect, process and analyse Syslog events and SNMP alarms both in near-real-time and from the historical archives in a new way. We successfully used NG-NetMS for delivery of network assessment services for our customers worldwide for many years. And now we want to share this unique and fully functional tool with community. It is not capped in terms of performance or number of nodes. The only limit is the hardware you deploy it on. http://www.opt-net.eu/products
Perl Console program to creates project files with content for perl.
Perl console and GUI program to creates files for projects. Run: $perl perl_create_files.pl for Console Run: $perl mhcrnl_run_gui.pl for GUI ============================ NEWS!!!------------ 10/10/2017------------!!!NEWS 1. Add Run buttons for perl executable files. 2. Add SourseForge button to push code to this site. ============================ The folder Templates must Run comands. And is a template for Perl Programs.
Perl Web Scraping Project
Web scraping (web harvesting or web data extraction) is data scraping used for extracting data from websites. Web scraping software may access the World Wide Web directly using the Hypertext Transfer Protocol, or through a web browser. While web scraping can be done manually by a software user, the term typically refers to automated processes implemented using a bot or web crawler. It is a form of copying, in which specific data is gathered and copied from the web, typically into a central local database or spreadsheet, for later retrieval or analysis. Web scraping a web page involves fetching it and extracting from it. Fetching is the downloading of a page (which a browser does when you view the page). Therefore, web crawling is a main component of web scraping, to fetch pages for later processing. Once fetched, then extraction can take place. The content of a page may be parsed, searched, reformatted, its data copied into a spreadsheet, and so on.
Source code for perl simple text editor.
Simple text editor. Run: $perl 01text0.pl
Run Windows applications on any computer.
WineBOX is an Open Source implementation of the Windows API and a program loader, allowing many unmodified Windows binaries to run on x86-based computers with out need a operative system.
Command line client interface for LOGalyze 4
Command line LOGalyze client. logalyze-cli is a powerful command line client for managing LOGalyze engine. With LOGalyze application log analyzer, you can collect your log data from any device, analyze, normalize and parse them.
arb is designed to solve arbitrary partial differential equations on unstructured meshes using an implicit finite volume method. arb's application is in Computational Fluid Dynamics (CFD), Heat and Mass transfer. Download from the project homepage.
A hidden Markov model to predict clustered RNA motif sites
Many RBPs recognize very short and degenerate sequences, with targeting specificity achieved by mechanisms such as synergistic binding to multiple clustered sites and modulation of site accessibility through different RNA-secondary structures. mCarts integrates the number and spacing of individual motif sites, their accessibility and conservation, which substantially improves signal to noise ratio. This algorithm learns and quantifies rules of these features, taking advantage of a large number of in vivo RBP binding sites obtained from high throughput sequencing of RNAs isolated by cross-linking and immunoprecipitation (HITS-CLIP). We applied this algorithm to study two representative RBPs, Nova and Mbnl. Despite the very low information content in individual motif elements, our algorithm made very specific predictions for successful experimental validation.
Verilog Finite State Machine (FSM) Code Generator
SmGen is a finite state machine (FSM) generator for Verilog. On the other hand, it is not an FSM entry tool. The input is behavioral Verilog with clock boundaries specifically set by the designer. SmGen unrolls this behavioral code and generates an FSM from it in synthesizable Verilog. Clock boundaries are explicitly provided by the designer so there is good control on the expected timing
Powerful Verilog Preprocessor. PLP stands for Perl Pre-processor. Perl is used as "control language" that is embedded in the Verilog code (or any other code) to generate code on the fly. It is used commonly as a Verilog pre-processor but can be used with any target/output language (C, C++, Java, VHDL, plain text etc)
ActionFolders are content-aware folders that allow you to orchestrate tasks based on file events. Whether you need automation, notification, workflow, or something more, ActionFolders are as flexible as your imagination.
The goal of the "revnet" project is to produce best protection script engine for eggdrop with linking support, revnet includes a system of components/modules so that you can easily add or remove functions from the partyline.
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in "Files" section) ############# GitHub : https://github.com/jbrayet/ncpro-seq
WHATCH’EM simulates mosquito container water temperature
WHATCH’EM simulates the highly non-linear manner in which atmospheric conditions and container characteristics determine water temperature and height, leading to results that are not always intuitive and likely not simulated by simpler empirical models. WHATCH’EM has the capacity to be utilized for other mosquitoes and other container-inhabiting arthropods.
Command Line Ham Radio Logbook
CLog is moved to Github!
An innovative Open Source CEP (Complex Event Processing) engine. It implements the event stream processing as a library embeddable in C++ and Perl. You can think of the Complex Event Processing engine as an in-memory database driven by triggers, or a data-flow machine, or a spreadsheet on steroids (and without the GUI part).
Full featured free PACS based on dcm4chee and mysql, with remote web accession available for Linux in Debian packaging format for x86 32 and 64 bit processors. (KEYWORDS: PACS,DICOM,HL7,WORK LIST)
An experimental CEP (Complex Event Processing) engine. It implements the event stream processing as a library embeddable in C++ and Perl. Since then it has been renamed to Triceps, so please look at the new location https://sourceforge.net/projects/t
Gerador/instalador de volumes de atualização
Desenvolvido para necessidades (até então) exclusivas da SGI Sistemas.
Minimal programming language
The goal of this project is to define a minimal programming language which can be implemented very easily on any platform.
BCAR is a library for the associative classification, which denotes "Boosting Class Association Rules". BCAR provides a general tool for classification tasks with various types of input data.