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Top Apps

  • ManageEngine now lets you patch computers from cloud ManageEngine now lets you patch computers from cloud Icon
    ManageEngine now lets you patch computers from cloud Icon

    ManageEngine Patch Manager Plus offers patching capabilities on cloud - Patch all OS updates and 550 third party apps on-demand and stay secure!

    Last year saw the hackers unleash their expertise in skills for a ransom - targeting those unpatched computers in data-critical institutions. Only if the computers were patched on time, billions of dollars could have been saved. ManageEngine’s Patch Manager Plus comes to your rescue, offering you an automated patching solution, now on cloud, for latest hotfixes of Windows updates and a wide range of third-party applications (over 550 of them).
    Automate patching with Patch Manager Plus, sit back & relax!
    Patch on cloud now
  • Multi-vendor storage monitoring simplified Multi-vendor storage monitoring simplified Icon
    Multi-vendor storage monitoring simplified Icon

    Monitor your multi-vendor storage to help ensure your applications get the performance & capacity they need with SolarWinds® Storage Resource Monitor.

    SolarWinds Storage Resource Monitor (SRM) gives you multi-vendor storage performance monitoring and alerting to help ensure peak storage performance. Automated capacity planning helps you predict storage shortages, reclaim space, and prevent application outages. SRM integrates with other Orion® Platform products to provide end-to-end visibility into the application stack, and lets you easily troubleshoot performance issues from application to storage.
  • ProPHAnE

    ProPHAnE: Proteomics result Pruning and Homology group Annotation Engine A perl script based workflow for annotation of protein data coming from the 'Mascot' (Matrix Science) and 'Scaffold' (Proteome Software) pipeline. Coming soon: Prophane 2, "a much improved and extended version of Prophane based on HTML5, PHP and MySQL. Most importantly, the pipeline includes now functional predictions on profile Hidden Markov models (HMMs), is fully-automated, and can be controlled via a highly intuitive and user-friendly interface." (Stephan Fuchs)

    Downloads: 0 This Week Last Update: See Project
  • HMM tools

    Bioinformatics tools and scripts to help analyze protein and nucleotide data through the use of Hidden Markov Models (HMMs). These will involve scripts, conversion programs and data to support the upcoming book, 'Hidden Markov Models for Bioinformatics'.

    Downloads: 0 This Week Last Update: See Project
  • HPeak

    A HMM-based algorithm for defining enriched regions from ChIP-seq data

    HPeak is a hidden Markov model-based approach that can accurately pinpoint regions to where significantly more sequence reads map. Testing on real data shows that these regions are indeed highly enriched by the right protein binding sites. Command (single-end): perl /compbio/software/HPeak3/ -sp HUMAN/MOUSE -format BED -t TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -fmin 100 -fmax 300 -r 36 -ann -wig -seq -interfiles Command (pair-end): perl /compbio/software/HPeak3/ -sp HUMAN/MOUSE -format BED -pe TREATMENT.inp -c CONTROL.inp -n OUTPUTPREFIX -isize 200 -r 100 -pec (if control is PE) -ann -wig -seq –interfiles note: 1. Default species is HUMAN. Also supports MOUSE. Can add any other genome if in need. 2. Default format is BED. Also support ELAND. Will add SAM and BAM. 3. –r specifies read length (this is import through my experience). 4. –pe indicates pair-ended data. 5. If data is pair-ended, -isize refers to insert size (total length of a pair).

    Downloads: 0 This Week Last Update: See Project
  • Web Application Firewall Detector

    Typical Web Firewalls use a mechanism to classify anomaly traffics. This tool submits an old-school malicious (not dangerous) request, and tells you the type of firewall a particular web site use (if any). Mainly useful for blackbox security assessment

    Downloads: 0 This Week Last Update: See Project
  • CGI based DNA analyzer

    DNAtools is a perl CGI based software wich analyzes DNA sequences in order to find out the maximum of information for further bio analysis. It is intended to help people to gain time.

    Downloads: 0 This Week Last Update: See Project
  • Locate Sensitive Data across Networks and Workstations Locate Sensitive Data across Networks and Workstations Icon
    Locate Sensitive Data across Networks and Workstations Icon

    Build the Business Case for Effective Security Investments

    Your customers recognize the importance of security, but often don’t realize the urgency until they see something tangible. SolarWinds® Risk Intelligence assigns value to your data vulnerability, helping you build a strong business case for data protection and triage the most important problems to tackle. Some powerful features include data risk communicated as financial impact, at-risk data discovery and PCI DSS, PAN & PII scans.
  • mWayToGo

    Written in perl, mWayToGo, converts palm database files (.pdb) created by the Magellan Nav Companion GPS software to comma delimited lists of waypoints. The lists include date of creation/editing, name/desc, lat, long, and height.

    Downloads: 0 This Week Last Update: See Project
  • wordgen

    Wordgen is a perl script for automaticaly generating a random character sequence based on a rule set. The rule set is specified in a flexible description language. Its main purpouse is automatic word generation for conlanging but may have other uses.

    Downloads: 3 This Week Last Update: See Project
  • ResData Deposit Tool

    A customisable web form to deposit metadata about research datasets into a Fedora repository. Based on open source VALET software, this tool was developed at UNSW Library. This project is supported by the Australian National Data Service (ANDS).

    Downloads: 0 This Week Last Update: See Project
  • Bugzilla-it

    Italian language pack for Bugzilla

    Downloads: 0 This Week Last Update: See Project
  • selectseq

    Get specific sequences from a multi-FASTA file.

    A command-line utility to manipulate biological sequences from a multi-FASTA file. It can, given a list of identifiers, get only a subset of the sequences (or their complement, i.e., sequences NOT in the list). Can also get sequence number N only.

    Downloads: 0 This Week Last Update: See Project
  • Monitor Your Most Critical Cloud & SaaS Applications Monitor Your Most Critical Cloud & SaaS Applications Icon
    Monitor Your Most Critical Cloud & SaaS Applications Icon

    Get insights into the performance of applications and services such as AWS, Salesforce, Office 365 and WebEx.

    With a view into both web and network health, you'll be able to pinpoint the cause of an outage instantly, whether it's within your network, a provider's network or the SaaS application. Save time, track SLAs and clear tickets faster.
    Are you involved with your company's network performance/operations team?
    Try It FREE!
  • SimBac

    SimBac is a software package for simulating bacterial genome evolution. It outputs samples of DNA sequences at each generation & allows testing of major evolutionary mechanisms, including mutation, recombination, genetic drift, and natural selection.

    Downloads: 0 This Week Last Update: See Project
  • BioInfoServ Project

    bioinformatic platform

    The ideal Operation System, BioInfoServOS, which is a specially customised system for scientists handling and analysing biological data, but also for easy use of daily official business handing, has been distributed. Offcial Website: [] (

    Downloads: 2 This Week Last Update: See Project
  • mpiGraph

    mpiGraph is designed to inspect the health and scalability of a high-performance interconnect while under heavy load. This is useful to detect hardware and software problems in a system, such as slow nodes, links, switches, or routing contention.

  • Encode Arabic Icon

    Encode Arabic

    Encode Arabic provides tools for encoding and decoding Arabic in Haskell, Python, Perl, or LaTeX. Interprets the ArabTeX notation to generate original orthography or phonetic transcription. Supports Buckwalter and other romanizations. Converts legacy byte encodings into Unicode.

  • ElixirFM Icon


    Functional Arabic Morphology

    ElixirFM is a high-level implementation of Functional Arabic Morphology. The core of ElixirFM is written in Haskell, while interfaces in Python and Perl support lexicon editing and other interactions.

  • Node Interactive Use Scheduler

    NIUS allows reservation of nodes under it's control for exclusive interactive use by a group of users. This system is in use by National Center for Data Mining at University of Illinois in Chicago to reserve workstations for researchers.

    Downloads: 0 This Week Last Update: See Project
  • mCarts

    A hidden Markov model to predict clustered RNA motif sites

    Many RBPs recognize very short and degenerate sequences, with targeting specificity achieved by mechanisms such as synergistic binding to multiple clustered sites and modulation of site accessibility through different RNA-secondary structures. mCarts integrates the number and spacing of individual motif sites, their accessibility and conservation, which substantially improves signal to noise ratio. This algorithm learns and quantifies rules of these features, taking advantage of a large number of in vivo RBP binding sites obtained from high throughput sequencing of RNAs isolated by cross-linking and immunoprecipitation (HITS-CLIP). We applied this algorithm to study two representative RBPs, Nova and Mbnl. Despite the very low information content in individual motif elements, our algorithm made very specific predictions for successful experimental validation.

    Downloads: 0 This Week Last Update: See Project
  • bib2html

    bib2html convert BibTeX descriptions of publications into a set of html pages with several different index pages types. Formatting is controllable through XSL.

  • ArielCLUSTER Parallel Virtual Machine

    ArielCLUSTER is a very tiny implementation of PVM architecture, written in perl.


    Simple Logging InfiniBand Infrastructure

    Downloads: 0 This Week Last Update: See Project
  • Glasgow Symmetry Reduction Tools

    The Glasgow Symmetry Reduction tools are a suite of software tools providing symmetry reduction for the SPIN and PRISM model checkers. The main tools are TopSPIN and GRIP. The suite also includes Etch, and enhanced type checker for Promela.

    Downloads: 0 This Week Last Update: See Project
  • trolLshaper

    trolL - the traffic alLocator for end-to-end model reservation for semi permanent connection

  • DNATweezer

    A suite of BioPerl wrappers for manipulating DNA and protein sequences

    DNATweezer is a suite of Perl scripts for manipulating DNA and proteins sequences. These scripts provide command-line access to the most frequently used BioPerl DNA object methods e.g. reverse-complement and translation of DNA sequences, slicing a sequence alignment, rerooting a phylogenetic tree, and calculating diversity of a population of DNA sequences.

    Downloads: 0 This Week Last Update: See Project
  • LaTeX in Word

    LatexInWord provides macros for Microsoft Word that allow the use of LaTeX input to create equations images in both inline and display modes. Similar macros for other word processors will hopefully be added in the future. We are currently in the process of migrating this project to GitHub: Client: Server:

  • EASER Icon


    Ensembl Easy Sequence Retriever

    Maldonado E, Khan I, Philip S, Vasconcelos V, Antunes A (2013) EASER: Ensembl Easy Sequence Retriever. Evolutionary Bioinformatics, 9:487-490. doi: 10.4137/EBO.S11335.

    Downloads: 0 This Week Last Update: See Project

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