SaskSAGE is package designed to exploit SAGE data. Csage is employed to identify and match SAGE tags in a biologically meaningful manner. Tags are analyzed for significance using a Chi squared test for independence between TAG and treatment.
The Glasgow Symmetry Reduction tools are a suite of software tools providing symmetry reduction for the SPIN and PRISM model checkers. The main tools are TopSPIN and GRIP. The suite also includes Etch, and enhanced type checker for Promela.
iCamp is a research and development project funded by the European Commission. The project aims at creating an infrastructure for collaboration and networking in Higher Education across systems.
msBayes allows complex and flexible phylogeographic inference. More specifically, you can test the simultaneous divergence (TSD) of multiple population (species) pairs. It uses approximate Bayesian computation (ABC) under a hierarchical model.
Visual GUI programmer for Attiny26 microcontroller for outputting assembly, assembling into hexedecimal and uploading to hardware with an intuitive interface (Tekbots-OSU).
A collection of Open Source scripts and software to help work with MLB and NFL stats.
EVidenceModeler (aka EVM) combines ab initio gene predictions and spliced protein and transcript alignments into weighted consensus gene structure predictions.
The Princeton Protein Orthology Database (P-POD), developed by the Genome Databases Group at Princeton, computes and displays families of orthologs between multiple organisms.
dataRADAR is a tool designed to be used in conjunction with the dataPOWER application from PDF. Making use of perl/php, it enables administrators greater visibility in the life cycle of tested wafers
SyntenyMiner provides a user interface to navigate matches between multiple genome sequences.
Convert time sequence data to C code which can be compiled and executed to generate data for output to hardware.
Classvault is a kind of School Class Groupware - Pupils can login to eg. see or add homework the class has to do for the next lesson. Everybody can add and view Calendar Events, Homework, Dates for the next english tests etc. See the Screenshots!
QMod is a semi-analytic model of Out of Order processor performance. The project downloads include MathCAD worksheets, a cycle-based simulator in Java, and helper scripts. See home page for papers.
Combine is an open system for crawling Internet resources. It can be used both as a general and focused crawler. If you want to download Web-pages pertaining to a particular topic (like 'Carnivorous Plants') Then Combine is the system for you!
Primer3plus is part of the Primer3 Project!
Opensource data management system, developed to organize and analyze the large amount of data generated in an EST/Genome Project workflow. It includes data loading tools (blast/chroms/fasta/filters/assemblies) and advanced/friendly web interface.
PGO is a parallel platform for general global optimization problems.
Design and develop Recommendation and Adaptive Prediction Engines to address eCommerce opportunities. Build a portfolio of engines by creating and porting algorithms from multiple disciplines to a usable form. Try to solve NetFlix and other challenges.
Bioinformatics software for analyzing the location of DNA motifs that induce self-catalytic depurination.
LabJ-ng is a laboratory notebook for organic chemists. It has a client-server architecture with a web browsers interface. Data is stored on MySQL database. Chemical reactions are drawned in java applet window. See projct website for example.
WURDE is middleware for robotics application development. It is designed to be maximally simple to develop in and easy to add support for alternate communications protocols. It includes a module management system.
trubadix, *the* data sonifier for great music
ASpipe is a pipeline to process GeneSeqer/GMAP alignments and identify alternative splicing (AS) events from the alignments. It requires unix bash, perl 5.0+ with DBI module and MySQL5.0+ to run properly.
COBALT (COntext-based AnaLysis of Transcription factor binding sites) is a novel package to predict DNA-binding sites based on their cis-regulatory context.