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Top Apps

  • Compare Cell Phone Plans at Wirefly Compare Cell Phone Plans at Wirefly Icon
    Compare Cell Phone Plans at Wirefly Icon

    You’re probably paying too much for cell phone service. Wirefly compares hundreds of plans to help you save.

    You’re probably paying too much for cell phone service. Wirefly compares hundreds of plans to help you save. Enter what you need (minutes, data, texts) into Wirefly’s innovative plan comparison tools and see your savings instantly.
  • License This HTML5 Speed Test for Your ISP or Network License This HTML5 Speed Test for Your ISP or Network Icon
    License This HTML5 Speed Test for Your ISP or Network Icon

    Are you an ISP or network administrator looking for a reliable, accurate, & affordable HTML5 speed test that works on all devices?

    The SourceForge Speed Test measures Latency/Ping, Jitter, Download Speed, Upload Speed, Buffer Bloat, and Packet Loss. Upon completion, you can view detailed reports about your connection. This HTML5 speed test does not require Flash or Java, and works on all devices including tablets and smartphones. Host on your own infrastructure or use ours. For licensing, inquire today.
  • CosmicOS

    CosmicOS is a framework for creating stand-alone messages suitable for sending to ourselves in the distant future, or to use in SETI research. It is inspired by Hans Freudenthal's language, Lincos, and Carl Sagan's book, Contact.

    Downloads: 11 This Week Last Update: See Project
  • ANDES

    ANDES. This is a library and a set of applications that can be used to analyze the results of deep sequencing results. (See Li et al.: ANDES: Statistical tools for the ANalyses of DEep Sequencing. BMC Research Notes 2010 3:199.)

  • HWUT - The Hello-Worldler's Unit Test Icon

    HWUT - The Hello-Worldler's Unit Test

    Software Unit Tests (Language Independent Approach)

    Automation of Unit and System Tests. Tests can be implemented in any language and on many platforms. The flexible approach enables the inclusion of many types of tests, such as memory leak checks (using valgrind), coding rule checks, complexity checks, etc. Tests are run by a simple call to hwut in a base directory of a project. In particular for C, HWUT supports make file generation using 'sos' and 'sols' modes. Remote control-able function stubs may be generated using the 'stub' mode. Test cases can be generated using the 'gen' mode, and state machine walkers by the 'sm_walker' mode. Over the last decade HWUT has matured towards a full fledged unit test tool for a wide variety of applications.

  • DIME-Tools

    It's a collection of Perl modules to parse and generate DIME messages. DIME messages are binary encoded and can carry any content type. The objetive to reach is to allow interoperability between several SOAP implementations that use DIME attachments.

    Downloads: 10 This Week Last Update: See Project
  • Free DELTA Icon

    Free DELTA

    Software tools for processing taxonomic descriptions in DELTA format

    The Free DELTA Project is a free, open-source, software alternative for a generic system to the processing of taxonomic descriptions based on the DELTA (DEscription Language for TAxonomy) format.

    Downloads: 10 This Week Last Update: See Project
  • Searching for Affordable Business Phone Service? Searching for Affordable Business Phone Service? Icon
    Searching for Affordable Business Phone Service? Icon

    If you're on the hunt for business phone service that is reliable and budget-friendly, Voice over Internet Protocol (VoIP) is your answer.

    Today's small-to-medium-sized (SMB) businesses and large enterprises are saving on their monthly communications costs by making one simple decision: to switch to a VoIP service solution from their old, outdated Plain Old Telephone Service (POTS). By choosing a new VoIP service, these companies enjoy the flexibility, reliability, call features, and audio quality that only a VoIP service can provide. Plus, they cut their phone bill by up to 70%!
  • PanOCT

    Pan-genome Ortholog Clustering Tool

    PanOCT, Pan-genome Ortholog Clustering Tool, is a program written in PERL for pan-genomic analysis of closely related prokaryotic species or strains. Unlike traditional graph-based ortholog detection programs, it uses micro synteny or conserved gene neighborhood (CGN) in addition to homology to accurately place proteins into orthologous clusters.

    Downloads: 10 This Week Last Update: See Project
  • Phage Finder

    Phage_Finder is a heuristic computer program written in PERL that uses BLASTP data, HMM results, and tRNA/tmRNA information to find prophage regions in complete bacterial genome sequences.

  • Wireless Routing Simulation Suite

    This project contains simulation codes of Dr. Jie Wu's wireless networking group at FAU, including a dominating set simulator (ds) and ns2 extensions for various virtual backbone formation, broadcast, and topology control schemes.

    Downloads: 10 This Week Last Update: See Project
  • parrot-win32

    The repository of the binaries for Windows of Parrot (Perl6 VM). The Parrot speaks your language but lives on http://www.parrot.org/

    Downloads: 10 This Week Last Update: See Project
  • BamBam

    Tools for genomic analysis

    BamBam includes numerous tools for analyzing DNA next-generation sequencing data. Tools are provided for calling SNPs and indels, identifying large scale deletions, tabulating counts of mapped reads, methylation analysis, and more. Depends on SAMtools (http://samtools.sourceforge.net/) and BAMtools (https://github.com/pezmaster31/bamtools). Also uses BioPerl, which is included in the download tarball.

    Downloads: 9 This Week Last Update: See Project
  • perlbox

    Perlbox Voice is an voice enabled application to bring your desktop under your command. With a single word, you can start your web browser, your favorite editor or whatever you want. This is the Linux and Unix voice recognition solution.

    Downloads: 9 This Week Last Update: See Project
  • scriptLattes

    scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.

  • FlowLIMS

    The Flow Cytometry Laboratory Information Management System (FlowLIMS) is a web-based software system that gives users the ability to create and manage experiment protocols for the DiVa and FACScan flow cytometers

  • MicroGP Icon

    MicroGP

    A multi-purpose extensible self-adaptive evolutionary algorithm

    MicroGP (uGP) is a versatile optimizer able to outperform both human experts and conventional heuristics in finding the optimal solution of hard problems. It is an evolutionary algorithm since it mimics some principles of the Neo-Darwinian paradigm.

  • Moses SMT Decoder Icon

    Moses SMT Decoder

    The Moses repository has moved: https://github.com/moses-smt/mosesdecoder Factored phrase-based, hierarchical and syntax decoder for statistical machine translation

  • FreeOSEK RTOS

    Project has been move to https://github.com/ciaa/Firmware

    The project is not more active, we have fix a lot of issue and perform many improvements. These are now deliverd as part of a new project: https://github.com/ciaa/Firmware ---- FreeOSEK is a scalable solution for embedded system. FreeOSEK OS is based on OSEK RTOS specification (OSEK-VDX). visit us in: http://opensek.sourceforge.net

  • EvidentialGene

    Evidence Directed Gene Construction for Eukaryotes

    EvidentialGene is a genome informatics project, "Evidence Directed Gene Construction for Eukaryotes", to construct high quality, accurate gene sets for animals and plants, developed by Don Gilbert at Indiana University, see http://arthropods.eugenes.org/EvidentialGene/ Construction refers to the combination of classical gene prediction, and more recent gene assembly (de-novo and genome-assisted) methods. The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification. All software developed for EvidentialGene is publicly available. See project wiki/blog for notes.

    Downloads: 8 This Week Last Update: See Project
  • LMAP Icon

    LMAP

    Lightweight Multigene Analyses in PAML

    Maldonado E, Almeida D, Escalona T, Khan I, Vasconcelos V and Antunes A (2016) LMAP: Lightweight Multigene Analyses in PAML. BMC Bioinformatics, 17:354. doi: 10.1186/s12859-016-1204-5

    Downloads: 8 This Week Last Update: See Project
  • STIRRUPS

    STIRRUPS

    Downloads: 8 This Week Last Update: See Project
  • Circonspect Icon

    Circonspect

    Circonspect is a bioinformatic tool to produce contig spectra, useful for the estimating viral diversity in metagenomes. It uses an external assembly program and a bootstrap technique to automate the generation of contig spectra and cross-contig spectra.

  • PlaTypUS Icon

    PlaTypUS

    Plasmodium Typing Utility Software

    The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes.

  • SpeedyQuant Icon

    SpeedyQuant

    Quantifies DNA, RNA or protein bands in agarose or acrylamid gels.

    SpeedyQuant is a gel imaging/analysis software that automatically detects and quantifies gel bands (DNA, RNA, protein) in agarose or acrylamid gels. When calculating the relative strength of each band (% of most prominent band) it takes the background noise into account. This leads to accurate and comparable results. Several options can be used to tune the detection process. Here we provide the source code of the program (Perl script) that can be run on any OS with Perl installed (e.g. the freely available Strawberry Perl). A Win-64bit executable is available at: www.foreach-bioinformatics.de

  • EvalMSA

    Perl-based tool for evaluating multiple sequence alignments

    Downloads: 7 This Week Last Update: See Project
  • MicrobiomeUtilities

    A set of software utilities for processing and analyzing 16S rRNA genes including generating NAST alignments, chimera checking, and assembling paired 16S rRNA reads according to reference sequence homology.

    Downloads: 7 This Week Last Update: See Project
  • Outline Beamer Class Presentation Maker

    This perl script helps users to create LaTeX Beamer Class presentations with the lowest effort possible. Just write an indented outline, the script does the rest. Status: useable (already in productive use by developer)

    Downloads: 7 This Week Last Update: See Project

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