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A bioinformatics tool to PRe-process and show INformation of SEQuence data. The tool is written in Perl and can be helpful if you want to filter, reformat, or trim your sequence data. It also generates basic statistics for your sequences.154 weekly downloads
This project aims the requirement of managed informations / documents in the treatment of patients, i.e. integrated care. The underlaying data model implements standards of electronic health recording, the project is based on a SQL db and Java EE framework. This is currently a student driven project for educational purposes.
Perl-Programs to extract information (and visualize them with gnuplot) from data-files from the PZG Particle Sampler from "rr-elektronik" (see http://www.rr-elektronik.de). Linux/KDE-version, GUI written in QT or Gambas. Win32-ver: pzg-tools.npage.de
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FALÁ is an emotive speech synthesizer for personalized speech. This synthesizer creates a profile for text-to-speech synthesis of the desired speech, providing a speech highly correlated with the content of the read text.
ClinStudyWeb is designed to provide a flexible infrastructure for managing patient and assay data from clinical studies. It uses a plugin system for study-specific web forms and arbitrarily complex test classifiers, and supports XML import/export.
Web Based Hospital Information System i.e for quality assurance (bedsore, decubitus ulcer) in Germany. Written in Perl and tested on MySQL. Works with HTML templates. Easy to modify. Available from any workstation through a Browser. Modular and scalable.
The Gene Expression Knowledge Base (GeXKB) encompasses three application ontologies: the Gene Expression Ontology (GeXO), the Regulation of Gene Expression Ontology (ReXO), and the Regulation of Transcription Ontology (ReTO). These three ontologies integrate increasingly more specific information relevant to gene expression from a variety of sources - GO, UniProt, IntAct, GOA, NCBI taxonomy and KEGG
Healthcare Xchange Protocol for interoperative communications. Data exchange/transfer, platform independent,XML-RPC, HL7, SOAP, EDIFACT, simple,easy, authenticated, secure, transparent, no geo-restrictions, open sourced, peer reviewed, collab development
eleMental Clinic is an open source medical records management system, targeted primarily at mental health professionals.
University Schedule Planner is an application with a web interfaced program that, given a set of teachers, a set of Studends and a set of classes each one with several restrictions, builds a schedule for the university classes. The actual implementation
Consensus Variant Effect Classification1 weekly downloads
Life Science Identifier (LSID) resolution protocol, to locate biologically significant data over a network, within middle-ware providing a client A.P.I. for Life Science applications, and server software, for Industry data providers.
NNW-NP North North West non polynomial problems. Bring back and develop NP in a friendly approach, using everything that is possible, and why not? We have now a todo list and we see light to solve this problem. Tryouts! We need new active members. Come!
The BEE Project is a suite of tools supporting Business Intelligence project implementation including ETL tool and OLAP server and a thin client. The ROLAP server ensures multipass SQL generation and powerful cache management (utilizes MySQL RDBMS).1 weekly downloads
The Open HeliSphere project encompasses the bioinformatics tool suite for the HeliScope single molecule sequencer.
tinyHeb is a Web application for midwives in Germany to do the legal accounting with the health insurance companies. tinyHeb can produce paper and electronic bills, and meets the legal requirements of §301a, §302 SGB V, resp.
CNV Workshop is a web-enabled platform for analyzing genome variation such as copy number variation (CNV). Learn about CNV Workshop in our associated BMC Bioinformatics manuscript: http://www.biomedcentral.com/1471-2105/11/742 weekly downloads
PROTOGENE: turning amino acid alignments into bona fide CDS nucleotide alignments, in an automatic way or drive by users.
DEPRECATED PROJECT! SolexaTools is becoming the SeqWare project (http://seqware.sourceforge.net) to better reflect its expanded sequencer support. Please go to this project page for code and documentation.
'isotope' is a small command-line utility to calculate the isotope pattern for a given chemical formula. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
A web service and HL7 version 3 based clinical data repository
The Parenthesis Classifier takes the contents of a set of parentheses and classifies it into one of several categories. It includes a parenthesized-data extractor and the classifier.
A fast efficient way of dealing with large amounts of Blast or Repeatmasker data.
myTemp is a thermometer for PalmOS PDAs. It uses a Dallas Semiconductor MicroLan sensor and provides logging functionality and multi-sensor support.
GPL-licensed Electronic Medical Record and Practice Management system for medical providers that runs in any web browser in multiple languages. It provides an XML-RPC backend and multiple import and export formats, as well as reporting and other features37 weekly downloads