Genetic variants discovery tool
Bioinformatics pipeline for discovery of genetic variants from NGS reads.
Eukaryotic Genome Assembler
!!! NEW !!! 1/2017 - We now have a version optimized for running Human assemblies on AWS: https://sourceforge.net/projects/meraculous20/files/Meraculous-v18.104.22.168-smp_patch1-2-gcac7312.tar.gz/download ----------------------------------------- Meraculous-2D is a whole genome assembler for NGS reads (Illumina) that is capable of assembling large, diploid genomes with modest computational requirements. Features include: - Fast and memory-efficient k-mer counts - Efficient deBruijn graph traversal - Two modes of handling of diploid allelic variation - Improved scaffolding that produces more complete assemblies without compromising scaffolding accuracy. The assembly is driven by a robust pipeline which performs data fragmentation and load balancing, as well as submission and monitoring of multiple task arrays on a Grid Engine-type cluster or a standalone multi-core server. Manuscripts in submission: https://arxiv.org/abs/1703.09852 https://arxiv.org/abs/1608.01031
Powerful and portable astrology program
Powerful and portable (Linux/Windows) astrology program, based on the swisseph library, with multitasking charts and data stored in a SQL database (postgresql). Many charts and options.
ISPConfig - ISP management and Hosting Control Panel. ISPConfig manages one or more webservers, mailservers, BIND DNS server, FTP servers, MySQL databases and virtual Servers with an easy to use webinterface for administrators, resellers and clients.
Open-source automated grading of programming assignments
Web-CAT is a plug-in based web application for automatically grading programming assignments in many programming languages. This project also provides Eclipse plugins for electronic submission and feedback services directly from the Eclipse IDE. We now use github for source code control (https://github.com/web-cat), although all file releases are still provided here through SourceForge. The CVS repository here is for archival purposes only.
Uniform interface to computing and data resources
UNICORE is a software suite for building federated systems, providing secure and seamless access to heterogeneous resource such as compute clusters and file systems. More: www.unicore.eu
The OpenGEREA is a open enrichment analysis framework for gene expression regulation data analysis.
The Courier mail transfer agent (MTA) is an integrated mail/groupware server based on open commodity protocols such as ESMTP, IMAP, POP3, LDAP, SSL, and HTTP. Courier provides ESMTP, IMAP, POP3, Webmail, calendaring, and mailing list services.
Fink brings the full world of Unix Open Source software to Darwin and Mac OS X. Packages are downloaded and built automatically and installed into a tree managed by dpkg, all with full dependency tracking.
Log analyser for Squid access.log
Screen squid is web-based interface for viewing reports based on Squid proxy server log files. It can be accessed from web-browser through more than 50 reports. No extra files, only DB. All reports generated "on-the-fly".
RigExpert AA-xxx antenna analyzer data extraction tool
aa-analyzer is a Perl script written by KB1OIQ which collects data from a RigExpert AA-xxx antenna analyzer and outputs it as a CSV file, which can be imported into any spreadsheet program.
The full codebase of Feisty Meow® Concerns Ltd.
Feisty Meow codebase offers a ton of useful bash scripts and implements several C++ libraries and many C++ applications. This is the Sourceforge mirror; visit our main site at: https://feistymeow.org
AWStats is a free powerful and featureful server logfile analyzer that shows you all your Web/Mail/FTP statistics including visits, unique visitors, pages, hits, rush hours, os, browsers, search engines, keywords, robots visits, broken links and more
A program for associating taxonomic information in a phylogenetic tree
TaxOnTree is a phylogenetic program for associating Taxonomic information in a phylogenetic tree. The output is a NEX format tree file configured to be opened in FigTree, that users can promptly color by any taxa or by the ancestrality shared by sequences with query. Input can be a Fasta formatted file to be used in a BLAST search or a list of sequences represented by their identifiers (UniProtAC or NCBI gi), if a cluster is already available. Also, a newick file produced with user software and specific settings can be used to proceed with the taxonomic labeling. TaxOnTree turns its user into an expert on taxonomy. TaxOnTree also corrects for the absence of some taxa in NCBI taxonomy. Command line program is easy to set up and can be coupled to several bioinformatics tools, producing a colored tree in PDF format. TaxOnTree is available as a web tool in http://biodados.icb.ufmg.br/taxontree for low demanding jobs.
ImageMagick is free software to create, edit, and compose bitmap images in many formats from the commandline or via programming interfaces. Images can be cropped, resized, and combined, effects can be applied, and text, polygons, and curves can be added.
Vietnamese IT-Group - Software Development And Translation
This Amazon Mechanical Turk (MTurk) SDK is no longer under active development as of TK. The latest MTurk SDKs, with support for most common programming languages, are now a part of the Amazon Web Service (AWS) SDKs at https://aws.amazon.com/tools/. With the AWS SDKs, you can also connect to MTurk using the AWS Command Line Interface (https://aws.amazon.com/cli/), allowing you to perform operations from your Windows, Mac, or Linux command line without having to write code.
ParseCNV CNV call association software takes CNV calls as input and creates SNP based statistics for CNV occurrence in population study cases and controls then calls CNVRs based on neighboring SNPs of similar significance.
An information system for cyclists in Berlin and Brandenburg
A bike information system for cyclists in Berlin and Brandenburg (Germany) with a map view and a routing engine. There's a graphical interface (based on Perl/Tk) as well as an Web interface. Source code may be found at Github: https://github.com/eserte/bbbike/
Database and csv files comparison tool, with some additional features of nice formatting selects' results.
The GREAT $120 GIVE AWAY! w/Robolinux 8.10 & runs Windows virus FREE!
Announcing "The GREAT $120 GIVE AWAY!" with Robolinux version 8.10 which runs Windows XP, 7 & 10 Virus Free!" Be a Hero to your Friends & Neighbors spread the word! This is our most exciting announcement since Robolinux was founded in 2011. As of January 3rd, 2018 all Robolinux Software is now Free! Robolinux is pleased to release Robolinux 8.10 Cinnamon, Mate 3D, Xfce 3D & LXDE 32 & 64 bit Raptor version downloads. What makes this new version so attractive to Linux users is for the first time Stealth VM for Robolinux, Stealth VM for Linux Mint, Ubuntu & other RPM systems, C Drive to VM, & the Robolinux Apps Installers are also now FREE! Plus a Free 30 day RoboCyberWall Apache2 & NGINX Firewall subscription. Saving you a total of $120! Please support Robolinux on Patreon. https://www.patreon.com/robolinux Please see the Readme.txt file for complete V8.10 details For all downloads click on the "Browse All Files" button above. Thank you!
OpenMAP Suite is a document management suite based on Subversion
The OpenMAP business suite has been actively developed since 2011. The suite provides everything a typical DMS needs: * user and group management * data access management * e-mail account management * synchronized, offline mode capable file drive * document management system with tagging, indexing and trailing * server side document backup and archiving system The OpenMAP data handling is mostly based on Subversion, further existing software systems are used to implement the different modules. The server software is intended to run on (Gentoo or Centos) Linux. Supported platforms for the client are Linux and Windows (XP, Vista, 7 and 8), Android support is planned.
Tahoe is a research-oriented platform for the development of numerical methods and models for the simulation of complex material behavior.
SuperDateTime Plugin for Squeezebox
SuperDateTime plugin for Squeezebox using wunderground to provide weather data. Modified from Greg Brown's original SuperDateTime plugin to fix and implement wunderground API for stable operation.
Perltidy is a Perl script which indents and reformats Perl scripts. The formatting is controlled by command line parameters; the default formatting follows the suggestions in perlstyle(1).