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Top Apps

  • SolarWinds is #1 in network monitoring. SolarWinds is #1 in network monitoring. Icon
    SolarWinds is #1 in network monitoring. Icon

    Reduce network outages and improve performance with advanced network monitoring software.

    SolarWinds® Network Performance Monitor (NPM) is the ONLY monitoring solution with NetPath™ for hop-by-hop visibility into your critical paths, on-premises and into the cloud. NPM also features PerfStack™, helping you accelerate identification of root cause by dragging-and-dropping network performance metrics on a common timeline for immediate visual correlation across all of your network data. See why we're the leader. Try it free for 30 days!
  • Take Advantage of O365 + Online Backup Bundles Take Advantage of O365 + Online Backup Bundles Icon
    Take Advantage of O365 + Online Backup Bundles Icon

    The Perfect Small Business Offer That Packages Productivity, Disaster Recovery & Security Under One Price Tag. Join SherWeb to Start Reselling.

    Add more value to your Office 365 offers with Online Backup. The program will back up servers, desktops, virtual machines and smart devices, plus popular applications and Office 365 data. Online Backup comes with the Active Protection feature embedded, making it possible to stop any ransomware attack and restore encrypted files in a blink. It also provides a web-based intuitive console that eases backup and disaster recovery management.
  • BRIC1936

    Brain imaging software produced by the Brain Research Imaging Centre of The University of Edinburgh.

    Downloads: 1 This Week Last Update: See Project
  • Biosignal Tools

    BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. A standalone signal viewer supporting more than 30 different data formats is also provided.

  • iElectrodes Icon

    iElectrodes

    intracranial electrodes localization toolbox

    iElectrodes is an open source toolbox to obtain intracranial electrode coordinates in a semiautomatic way with minimal user intervention. It uses MRI and CT coregistered images. It is possible to add brain parcellations and brain surfaces. It works in the native or normalized MNI space The toolbox is capable to work with ECoG (subdural grids and strips) and SEEG (depth) electrodes. In the presurgical evaluation of patients with drug resistant epilepsy is of great importance to know the intracranial electrodes coordinates and the anatomical description of these locations. Additionally, you can plan depth electrode implantation and then compare it with the real locations. Visit iElectrodes Wiki tab to learn more about the toolbox. Please report any bugs to ielectrodes-updates@lists.sourceforge.net We are trying to make iElectrodes a great toolbox everyday! Thanks for your help! Additional scripts are provided to make image corregistations using SPM software.

    Downloads: 5 This Week Last Update: See Project
  • EEG/MRI TOOLBOX FOR MATLAB

    Obsolete project - archived at https://github.com/darrenleeweber/bioelectromagnetism This is a public release of a Matlab toolbox for working with data from electroencephalography (EEG/ERP) and magnetic resonance imaging (MRI). It contains functions to process and visualize ERP/MRI data and associated electrode positions.

  • Probabilistic Networks Generator in Java

    Projeny (Probablistic Networks Generator in Java) is a graphical (Java SWT) front-end to BNT (Bayes Net Toolbox for Matlab). Projeny requires BNT, JMatLink and a Matlab back-end. There is no installable release package, but source code is available on SVN - please check out from SVN to use Projeny. Projeny was started with BNJ as the base.

  • Take Our Survey. We Plant a Tree. Take Our Survey. We Plant a Tree. Icon
    Take Our Survey. We Plant a Tree. Icon

    In honor of Earth Day, HPCC Systems is committed to planting 10,000 new trees across our national forests.

    HPCC Systems is dedicated to the environment and is giving you the opportunity to take action and be a small part of a big impact. In partnership with the National Forest Foundation, HPCC Systems is growing and promoting awareness of environmental sustainability with their 10K Trees Challenge. The best time to plan a tree was 20 years ago. The second best time is now! Take our survey and take part in helping the environment.
  • PALM Icon

    PALM

    Probabilistic natural mapping for gene based association study.

    PALM is a software that conducts gene-based association analysis. PALM exploits Hidden Markov Models (HMM) to capture the inner genomic structures. Then, unique gene features (termed "palm prints") are extracted for each gene set by calculating the natural gradient. Then palm-prints are tested with chi-square significance test.

    Downloads: 0 This Week Last Update: See Project
  • CTF-SAM-OUT, superposing CTF SAM and MRI

    A tool to register and superpose CTF MEG SAM(g2) result and MRI image into one gray-level image.

    Downloads: 0 This Week Last Update: See Project
  • Informatica Medica

    Proyecto de colaboración entre estudiantes de la universidad politecnica de valencia que realizan la materia de informatica medica.

    Downloads: 0 This Week Last Update: See Project
  • Cell Tracking and eXtraction

    Cell tracking and segmentation software

    Downloads: 0 This Week Last Update: See Project
  • SPM tools

    Toolboxes for SPM (http://www.fil.ion.ucl.ac.uk/spm/) developed at Freiburg Brain Imaging (http://fbi.uniklinik-freiburg.de/)

  • Take Advantage of O365 + Online Backup Bundles Take Advantage of O365 + Online Backup Bundles Icon
    Take Advantage of O365 + Online Backup Bundles Icon

    The Perfect Small Business Offer That Packages Productivity, Disaster Recovery & Security Under One Price Tag. Join SherWeb to Start Reselling.

    Add more value to your Office 365 offers with Online Backup. The program will back up servers, desktops, virtual machines and smart devices, plus popular applications and Office 365 data. Online Backup comes with the Active Protection feature embedded, making it possible to stop any ransomware attack and restore encrypted files in a blink. It also provides a web-based intuitive console that eases backup and disaster recovery management.
    Are you an IT professional looking to profit from reselling Office 365?
    Sign up NOW, it’s FREE
  • FieldTrip Icon

    FieldTrip

    The MATLAB software toolbox for MEG and EEG analysis

    FieldTrip is the Matlab toolbox for EEG and MEG data. It includes algorithms for simple and advanced analysis, such as importing, preprocessing, time-frequency analysis, source reconstruction, statistical testing and connectivity analysis.

    Downloads: 0 This Week Last Update: See Project
  • HRVAS: HRV Analysis Software Icon

    HRVAS: HRV Analysis Software

    This project will be moving to GitHub. If you want to contribute or get the latest source go to: https://github.com/jramshur/HRVAS HRVAS is a heart rate variability (HRV) analysis tool developed using MATLAB. HRVAS can detrend and filter IBI and can perform time domain, frequency domain, time-frequency, Poincare', and nonlinear HRV analysis. If you use this application or modify this application for your research, please reference the thesis entitled "DESIGN, EVALUATION, AND APPLICAION OF HEART RATE VARIABILITY ANALYSIS SOFTWARE (HRVAS)". The thesis can be found here: http://iweb.dl.sourceforge.net/project/hrvas/Documents/ramshur_thesis.pdf

  • NiftyRec Icon

    NiftyRec

    This project, developed at UCL London, provides code for tomographic reconstruction. NiftyRec is written in C and has Python and Matlab extensions. Computationally intensive functions have a GPU accelerated version based on CUDA.

  • The Neurophysiological Biomarker Toolbox Icon

    The Neurophysiological Biomarker Toolbox

    NBT is an open source Matlab toolbox for the computation and integration of neurophysiological biomarkers. NBT allows for easy implementation of new biomarkers, and incorporates an online wiki with extensive help and tutorials.

    Downloads: 17 This Week Last Update: See Project
  • MEG_DeMoN

    This project is a lab prototype of MEG default mode network in MATLAB.

    Default mode network (DMN) or task negative network (TNN) may provide useful information on state of brain. Normal brain is constantly busy and demonstrates a network of synchronized activity at distinct brain regions. Trauma, injury, or resection ruptures this natural network of neuronal connectivity, subsequently altering the default scheme of synchronized activation. This utility is designed to quickly analyze and visualize the default mode network, at current state of brain, for MEG data acquired from any subject. Customization of threshold and sampling rate, followed by complete circular visualizations for quick clinical references are a plus. The program is primarily designed to facilitate clinicians, and researchers. The researchers can further analyze, if required, using the MAT file stored from the last analysis. Moreover, the framework can be used to estimate functional connectivity while performing any particular task.

    Downloads: 0 This Week Last Update: See Project
  • Stereo Vision Motion Tracking software

    SVMT: A MATLAB toolbox for Stereo-vision motion tracking of motor reactivity elicited by sensory stimulation.

    Downloads: 4 This Week Last Update: See Project
  • STI analysis and forecasting Icon

    STI analysis and forecasting

    Analysis of drug resistance and epidemiology of STI (STD) in Russia

    The STIanafor is a tool for spatio-temporal data vizualization, analysis and forecast of incidence of sexually-transmitted diseases and drug resistance of pathogens in the Russian Federation. Currently supports gonorrhoea (N. gonorrhoeae) and syphilis (T. pallidum). A set of real data for testing is provided.

    Downloads: 0 This Week Last Update: See Project
  • WM Hyperintensities Segmentation Toolbox Icon

    WM Hyperintensities Segmentation Toolbox

    Open Source White Matter Hyperintensities Segmentation Toolbox

    Wisconsin White Matter Hyperintensity Segmentation [W2MHS] and Quantification Toolbox is an open source MatLab toolbox designed for detecting and quantifying White Matter Hyperintensities (WMH) in Alzheimer’s and aging related neurological disorders. WMHs arise as bright regions on T2- weighted FLAIR images. They reflect comorbid neural injury or cerebral vascular disease burden. Their precise detection is of interest in Alzheimer’s disease (AD) with regard to its prognosis. Our toolbox provides a self-sufficient set of tools for segmenting these WMHs reliably and further quantifying their burden for down-processing studies.

    Downloads: 0 This Week Last Update: See Project
  • Matlab Network Analysis toolbox

    A collection of functions, in the end to be wrapped in a gui, that allow users to analyze networks from global (eigenvector centrality) and local (degree dist, statistical significance) perspectives. Implemented in matlab.

    Downloads: 1 This Week Last Update: See Project
  • MRI-PDQ:Phase Detection & Quantification Icon

    MRI-PDQ:Phase Detection & Quantification

    Detect sphere-shaped paramagnetic deposits in MRI datasets

    Moved to http://parkermills.github.io/MRI-PDQ/

    Downloads: 0 This Week Last Update: See Project
  • DAT_Analyzer Icon

    DAT_Analyzer

    striatal subregional analysis tool for dopamine transporter PET

    DAT_Analyzer (DANA) is fully automated tool for analyzing dopamine transporter PET. DANA utilizes coregistration and spatial normalization functions in SPM8 and therefore requires MATLAB 7.1 (or higher) and SPM8 in 64bit environment with more than 8 GB RAM. MAC OSX OS is recommended. It includes various custom templates for conventional MR, DARTEL MR, two type of CT, and ligand specific PET and also includes various types of striatal subregional VOI templates. It supports five types of spatial normalization methods. (This project will be uploaded soon. It's now under construction.)

    Downloads: 0 This Week Last Update: See Project
  • MEP Auswertung

    This program has been written having in mind to create an useful tool to evaluate the Motor Evoked Potentials (MEPs) generated by Transcranial Magnetic Stimulation (TMS) and recorded with the program "Signal" (version 2.xx).

    Downloads: 0 This Week Last Update: See Project
  • dclab

    A matlab software platform (GUI included) for implementing literature-inspired/novel models of contrast dynamics for -- then ultimately analyzing series generated by -- the dynamic contrast-enhanced MR modality.

    Downloads: 0 This Week Last Update: See Project
  • CupidTool

    Cupid: simultaneous reconstruction of miRNA-target and ceRNA networks

    Chiu et. al., Genome Research 2014 Cupid is a method for simultaneous prediction of miRNA-target interactions and their mediated competitive endogenous RNA (ceRNA) interactions. We showed that our integrative approach significantly improves on miRNA-target prediction accuracy as assessed by both mRNA and protein level measurements in breast cancer cell lines. Cupid is implemented in 3 steps: Step 1: re-evaluate candidate miRNA binding sites in 3’ UTRs, as inferred by TargetScan, miRanda and PITA by integrating their scores, location in the 3’ UTR, and cross-species conservation. Step2: interactions are predicted by integrating information about selected sites, their multiplicity, and the statistical dependency between the expression profiles of miRNA and putative targets. Likelihoods for each predictive feature are computed based on a positive gold standard set. Step 3: Cupid assesses whether inferred targets compete for predicted miRNA regulators.

    Downloads: 22 This Week Last Update: See Project
  • MRI-PSM: Phase Slope Magnitude Imaging Icon

    MRI-PSM: Phase Slope Magnitude Imaging

    Generate positive-contrast images emphasizing magnetic field variation

    Moved to: http://parkermills.github.io/MRI-PSM/

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